EDITED MONOGRAPHS:

2008

James R. Warren, Ping Yu, John Yearwood and Jon D. Patrick, Eds. Health Data and Knowledge Management 2008. Proceedings of the Second Australasian Workshop on Health Data and Knowledge Management (HDKM 2008), Wollongong, NSW, Australia, January 2008. Conferences in Research and Practice in Information Technology, Volume 80.

Book Chapters:

2009

Zhang Y. and Patrick J. Extracting Patient Case Profiles with Domain-specific Semantic Categories. In Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration. Violaine Prince and Mathieu Roche (Eds). IGI Gobal, 2008.

Patrick J. and Asgari, P. The New Frontier - Analysing Clinical Notes for Translation Research - Back to the Future. In Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration. Violaine Prince and Mathieu Roche (Eds). IGI Global, 2008. 

2006

Patrick J, Wang Y, Miller G, O’Halloran J. Automatic Mapping ICPC2-PLUS Terms into SNOMED CT Terminologies. Health Informatics Conference, Sydney, 2006.
HIC2006 Bridging the Digital Divide: Clinician, Consumer and Computer. (Eds.) J. Westbrook, J. Callen & G. Margelis. Health Informatics Society of AustraliaVictoria.
pp (HISA): [pdf]

Journal publications:

2008

James R. Warren, Ping Yu, John Yearwood and Jon D. Patrick, Eds.
Health Data and Knowledge Management 2008. Proceedings of the Second Australasian Workshop on Health Data and Knowledge Management (HDKM  2008), Wollongong, NSW, Australia, January 2008. Conferences in  
Research and Practice in Information Technology, Volume 80.

Zhang Y. and Patrick J. Extracting Patient Case Profiles with Domain-specific Semantic Categories. In Information Retrieval in  Biomedicine: Natural Language Processing for Knowledge Integration.  Violaine Prince and Mathieu Roche (Eds). IGI Gobal, 2008 (in the press).

Patrick J. and Asgari, P. The New Frontier - Analysing Clinical Notes for Translation Research - Back to the Future. In Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration. Violaine Prince and Mathieu Roche (Eds). IGI Global, 2008 (in the press).

Patrick, J. The use of Systemic Functional Linguistics in the Scamseek project. In J. Webster (ed.), Meaning In Context:  
Implementing Intelligent Applications of Language Studies, Continuum International Publishing Group, 2008, pp221-233.

REFEREED PAPERS

Yefeng Wang, Jon Patrick, Graeme Miller and Julie O'Hallaran. A computational linguistics motivated mapping of ICPC-2 PLUS to SNOMED CT. BMC Medical Informatics and Decision Making 2008, 8(Suppl 1):S5. http://www.biomedcentral.com/1472-6947/8/S1/S5

Patrick, J. Wang, Y., Budd, P., Rector, A. Brandt, S. Rogers, J. Herkes, R. Ryan, A and Vazirnezhad, B. Developing SNOMED CT Subsets from Clinical Notes for Intensive Care Service. Health Care and Informatics Review Online (HCIRO), 2008 (in the press). Also in Proceedings: Health Informatics New Zealand, 7th annual conference and exhibition.  Health informatics: improving and exploiting our health information (ISBN 978-0-473-14175-2).

Patrick, J.,  Gao, P. and Li, X. Rescuing Data from Decaying and Moribund Clinical Information Systems. Health Care and Informatics Review Online (HCIRO), 2008 (in the press).

MacIsaac, P.,  Walker, D., Richesson, R.,  Grain, H., Elkin, P. and Patrick, J. (2008) Essential SNOMED: Simplifying SNOMED CT and Supporting Integration with Health Information Models. KR-MED 2008.  AMIA. Phoenix, USA.

 Wang, F, & Patrick, J. Mapping Clinical Notes to Medical  Terminologies at Point of Care. In Proc of BioNLP2008. eds D. Demner- Fushman, S. Ananiadou, K. Bretonnel Cohen, J. Pestian, J. Tsujii, and B. Webber. Association for Computational Linguistics (ACL), ISBN 978-1-932432-11-4, 2008, pp102-103.

 Ryan, A. Patrick, J & Herkes, R. (2008). Introduction of Enhancement  Technologies into the Intensive Care Service, Royal Prince Alfred  Hospital, Sydney. Health Information Management Journal  Vol 37 No 1 2008 ISSN 1833-3583 (PRINT) ISSN 1833-3575 (ONLINE), pp39-44.

2007

Zhang, Y. & Patrick, J. Extracting Patient Case Profiles with Domain-specific Semantic Categories. Electronic Journal of Health Informatics.

Patrick,J. Wang,Y.  Miller,G. and  O'Halloran, J. Automatic mapping of ICPC-2 PLUS terms to the SNOMED CT terminology. electronic Journal of Health Informatics. 2007, 2 (2): e 11, (2007). (http://ejhi.net/ojs/index.php/ejhi/issue/view/4).  [pdf]

Zhang, Y, & Patrick J. Extracting Semantics in a Clinical Scenario. Health Knowledge & Data Mining Workshop, Ballarat, Conferences in Research & Practice in Information Technology, 68, pp. 217-224, 2007. [pdf]

Wang, Y. & Patrick, J. An automated system for Conversion of Clinical notes into SNOMED CT. Health Knowledge & Data Mining Workshop, Ballarat, Research & Practice in Information Technology, 195-202, 2007.  [pdf]

Conference papers:

2007

Patrick, J. Zhang, Y. and Wang,Y. Evaluating Feature Types for Encoding Clinical Notes. Proceedings of the 10th Conference of the Pacific Association for Computational Linguistics, 2007, 218-225.

Patrick, J.; Zhang, Y. & Wang, Y.  Developing Feature Types for Classifying Clinical Notes. Proceedings of the Workshop on BioNLP 2007, 2007, 191-192. (Poster).

Patrick, J, Cheng, Y. Wang, Y. Real-time Semantic Encoding of Ward Round Progress Notes using an Ontology Web Service, MedSem Workshop, MEDINFO 2007, Brisbane. pp 45-54.

2006

Patrick, J. Metonymic and Holonymic Roles and Emergent Properties in the SNOMED CT Ontology, Advances in Ontologies, M.H. Orgun & Tf, Meyer (Eds). Advances in Ontologies (AOW 2006), Tasmania, Conferences in Research & Practice in Information Technology, 72, pp61-68, 2006.  [pdf]

Patrick, J. Aggregation and Generalisation in SNOMED CT. Proc of Semantic Mining Conference on SNOMED, Copenhagen, 2006. [pdf] 


Zhang, M. Patrick, J. Truran, D &  Innes, K. Deriving a SNOMED CT Data Model. Proc of Semantic Mining Conference on SNOMED, Copenhagen, 2006. [pdf] 

Wang Y, Patrick J,  Miller G,  O’Halloran J.  Linguistic Mapping of Terminologies to SNOMED CT. Proc of Semantic Mining Conference on SNOMED, Copenhagen, 2006. [pdf]

Zhang, M. Patrick, J. & Truran, D.  Inference of a SNOMED CT data model. Bridging the Digital Divide: Clinician, Consumer and Computer. (Eds.) J. Westbrook, J. Callen & G. Margelis. Health Informatics Society of Australia (HISA): Victoria. pp  [pdf]  

Patrick J, Ly R.  & Truran, D. Evaluation of persistent Store for openEHR. Bridging the Digital Divide: Clinician, Consumer and Computer. (Eds.) J. Westbrook, J. Callen & G. Margelis. Health Informatics Society of AustraliaVictoria. pp (HISA):

Patrick, J. & Budd, P. Automatic conversion of clinical notes into SNOMED CT at point of care. Bridging the Digital Divide: Clinician, Consumer and Computer. (Eds.) J. Westbrook, J. Callen & G. Margelis. Health Informatics Society of Australia (HISA): Victoria. pp [pdf] 

Patrick, J., Wang, Y. Miller, G. O’Hallaran, J. Automatic mapping of ICPC-2PLUS terms SNOMED CT Australia (HISA): Victoria. pp terminologies. Bridging the Digital Divide: Clinician, Consumer and Computer. (Eds.) J. Westbrook, J. Callen & G. Margelis. Health Informatics Society of Australia:Victoria. pp (HISA):  [pdf]

Workshop Abstracts:

2008

Budd P. A Taxonomy of Terminology Server Desiderata. BioSearch Workshop Brisbane 2008   [pdf]

Sabbagh-Jafari M. Automated De-identification of the Clinical Documents. BioSearch Workshop Brisbane 2008   [pdf]