Associate Professor Bing Zhou

Associate Professor
Distributed Computing Applications Theme Leader
School of Information Technologies

J12 - The School of Information Technologies
The University of Sydney

Telephone +61 2 9036 9112
Fax +61 2 9351 3838

Website School of Information Technologies

Personal Page

Centre for Distributed and High Performance Computing

Teaching and supervision

COMP3520 - Operating Systems Internals

COMP5213 - Computer and Network Organisation

COMP5426 - Parallel and Distributed Computing

Selected grants

2014

  • A framework for HPC Software Services in the Cloud; Zhou B; DVC Research/Bridging Support Grant.

2013

  • Optimising Service Level Agreements for Performance and Energy Efficiency in Cloud Computing Systems; Zomaya A, Zhou B; Australian Research Council (ARC)/Discovery Projects (DP).

2010

  • Replica placement in data-intensive distributed computing systems; Zomaya A, Zhou B; Australian Research Council (ARC)/Discovery Projects (DP).

2009

  • An Integrative and Interactive Approach for Co-estimation of Multiple Sequence Alignment and Phylogeny Reconstruction; Zhou B, Brent R; Australian Research Council (ARC)/Discovery Projects (DP).

2006

  • A grid-enabled meta server for protein threading; Charleston M, Zomaya A, Viglas A, Zhou B; Australian Research Council (ARC)/Discovery Projects (DP).

2005

  • Collaborative Community Networks - TITAN; Selvadurai S, Landfeldt B, Greenhalgh A, McLachlan T, Zomaya A, Zhou B, Scholz B, Everitt D, Viglas A; Smart Internet Technology Cooperative Research Centre/Research Support.
  • A Framework for the Development of Parallel Protein Structure Prediction Algorithms; Zomaya A, Zhou B; University of Sydney/Research & Development.
  • Grid computing for phylogenetic analysis; Zhou B, Dongarra J, Brent R; Australian Research Council (ARC)/Discovery Projects (DP).

2004

  • Phylogenetic analysis using high-performance parallel computer systems; Zhou B; DVC Research/Research and Development Scheme: Newly Appointed Staff (NAS).

2002

  • Job scheduling strategies for general-purpose high performance computer clusters; Zhou B; Australian Research Council (ARC)/Discovery Projects (DP).

Selected publications

Download citations: PDF RTF Endnote

Book Chapters

  • Alqaralleh, B., Wang, C., Zhou, B., Zomaya, A. (2011). A flexible data store for managing bioinformatics data. In Mourad Elloumi, Albert Zomaya (Eds.), Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, (pp. 221-239). Hoboken, New Jersey, USA: Wiley.
  • Yoo, P., Zhou, B., Zomaya, A. (2011). Protein Domain Boundary Prediction. In Mourad Elloumi, Albert Zomaya (Eds.), Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, (pp. 501-519). Hoboken, New Jersey, USA: Wiley.
  • Wang, C., Zomaya, A., Zhou, B. (2008). Data syndication techniques for bioinformatics applications. In Talbi E; Zomaya A Y (Eds.), Grid Computing for Bioinformatics and Computational Biology, (pp. 157-177). New Jersey, USA: John Wiley & Sons.
  • Zhou, B., Brent, R. (2001). On the Development of an Efficient Coscheduling System. In Dror G. Feitelson & Larry Rudolph (Eds.), Job Scheduling Strategies for Parallel Processing: 7th International Workshop, JSSPP 2001, Cambridge, MA, USA., June 16, 2001 Revised Papers, (pp. 103-115). Germany: Springer.

Journals

  • Yang, P., Yoo, P., Fernando, J., Zhou, B., Zhang, Z., Zomaya, A. (2014). Sample Subset Optimization Techniques for Imbalanced and Ensemble Learning Problems in Bioinformatics Applications. IEEE Transactions on Cybernetics, 44(3), 445-455. [More Information]
  • Li, D., Liao, X., Jin, H., Zhou, B., Zhang, Q. (2013). A new disk I/O model of virtualized cloud environment. IEEE Transactions on Parallel and Distributed Systems, 24(6), 1129-1138. [More Information]
  • Li, D., Jin, H., Liao, X., Zhang, Y., Zhou, B. (2013). Improving disk I/O performance in a virtualized system. Journal of Computer and System Sciences, 79(2), 187-200. [More Information]
  • Liu, X., Wang, C., Zhou, B., Chen, J., Yang, T., Zomaya, A. (2013). Priority-based consolidation of parallel workloads in the cloud. IEEE Transactions on Parallel and Distributed Systems, 24(9), 1874-1883. [More Information]
  • Chen, G., Jin, H., Zou, D., Zhou, B., Liang, Z., Zheng, W., Shi, X. (2013). SafeStack: Automatically Patching Stack-Based Buffer Overflow Vulnerabilities. IEEE Transactions on Dependable and Secure Computing, 10(6), 368-379. [More Information]
  • Yang, P., Ma, J., Wang, P., Zhu, Y., Zhou, B., Yang, J. (2012). Improving X!Tandem on peptide identification from mass spectrometry by self-boosted percolator. IEEE - ACM Transactions on Computational Biology and Bioinformatics, 9(5), 1273-1280. [More Information]
  • Lee, Y., Wang, C., Zomaya, A., Zhou, B. (2012). Profit-driven scheduling for cloud services with data access awareness. Journal of Parallel and Distributed Computing, 72(4), 591-602. [More Information]
  • Yang, P., Ho, J., Yang, J., Zhou, B. (2011). Gene-gene interaction filtering with ensemble of filters. BMC Bioinformatics, 12(Supp 1: S10), 1-10. [More Information]
  • Yang, P., Zhang, Z., Zhou, B., Zomaya, A. (2010). A clustering based hybrid system for biomarker selection and sample classification of mass spectrometry data. Neurocomputing, 73(13-15), 2317-2331.
  • Yang, P., Ho, J., Zomaya, A., Zhou, B. (2010). A genetic ensemble approach for gene-gene interaction identification. BMC Bioinformatics, 11(524), 1-15. [More Information]
  • Yang, P., Zhou, B., Zhang, Z., Zomaya, A. (2010). A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data. BMC Bioinformatics, 11(Suppl 1), S5-1-S5-12.
  • Wang, P., Zhou, B., Wang, C., Zomaya, A. (2010). A Novel Integrative Phylogenetic Analysis System. International Journal of Computational Biology and Drug Design, 3(1), 1-14. [More Information]
  • Yang, P., Yang, J., Zhou, B., Zomaya, A. (2010). A Review of Ensemble Methods in Bioinformatics. Current Bioinformatics, 5(4), 296-308.
  • Wang, C., Zhou, B., Zomaya, A. (2010). EvolvingSpace: A Data Centric Framework for Integrating Bioinformatics Applications. IEEE Transactions on Computers, 59(6), 721-734. [More Information]
  • Wang, C., Zhou, B., Zomaya, A. (2009). A Decentralized Method for Scaling Up Genome Similarity Search Services. IEEE Transactions on Parallel and Distributed Systems, 20(3), 303-315.
  • Yoo, P., Zhou, B., Zomaya, A. (2009). A modular kernel approach for integrative analysis of protein domain boundaries. BMC Genomics, 10(Suppl 3), S21-1-S21-13.
  • Yang, P., Xu, L., Zhou, B., Zhang, Z., Zomaya, A. (2009). A particle swarm based hybrid system for imbalanced medical data sampling. BMC Genomics, 10(Suppl 3), S34-1-S34-14.
  • Yoo, P., Sikder, A., Taheri, J., Zhou, B., Zomaya, A. (2008). DomNet: Protein Domain Boundary Prediction Using Enhanced General Regression Network and New Profiles. IEEE Transactions on Nanobioscience, 7(2), 172-181.
  • Yoo, P., Sikder, A., Zhou, B., Zomaya, A. (2008). Improved general regression network for protein domain boundary prediction. BMC Bioinformatics, 9(Supp 1: S12), 1-13. [More Information]
  • Yoo, P., Zhou, B., Zomaya, A. (2008). Machine Learning Techniques for Protein Secondary Structure Prediction: An Overview and Evaluation. Current Bioinformatics, 3(2), 74-86. [More Information]
  • Yoo, P., Ho, Y., Zhou, B., Zomaya, A. (2008). SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles. BMC Bioinformatics, 9(272), 1-17. [More Information]
  • Zhang, Y., Chen, M., Zhou, B., Jermiin, L., Larkum, A. (2007). Evolution of the inner light-harvesting antenna protein family of Cyanobacteria, algae and plants. Journal of Molecular Evolution, 64(3), 321-331. [More Information]
  • Zhou, B., Brent, R. (2003). An Efficient Method for Computing Eigenvalues of a Real Normal Matrix. Journal of Parallel and Distributed Computing, 63(6), 638-648.
  • Zhou, B., Goscinski, A., Brent, R. (2003). Concerning the Length of Time Slots for Efficient Gang Scheduling. IEICE Transactions on Information and Systems, E86-D(9), 1594-1600.

Conferences

  • Zhou, B. (2014). VDB: Virtualizing the On-board Disk Write Cache. 15th International Conference on High Performance Computing and Communications, China: IEEE Computer Society.
  • Yang, P., Liu, W., Zhou, B., Chawla, S., Zomaya, A. (2013). Ensemble-Based Wrapper Methods for Feature Selection and Class Imbalance Learning. 17th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), Heidelberg: Springer. [More Information]
  • Chen, J., Zhou, B., Wang, C., Lu, P., Wang, P., Zomaya, A. (2013). Throughput enhancement through selective time sharing and dynamic grouping. 27th IEEE International Parallel & Distributed Processing Symposium, Piscataway, New Jersey: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Liu, X., Wang, C., Qiu, X., Zhou, B., Chen, B., Zomaya, A. (2012). Backfilling under Two-tier Virtual Machines. IEEE International Conference on Cluster Computing (CLUSTER), 2012, Los Alamitos: IEEE Xplore. [More Information]
  • Wang, C., Chen, J., Zhou, B., Zomaya, A. (2012). Just Satisfactory Resource Provisioning for Parallel Applications in the Cloud. 2012 IEEE Eighth World Congress on Services, Los Alamitos: IEEE Computer Society.
  • Lu, P., Lee, Y., Wang, C., Zhou, B., Chen, J., Zomaya, A. (2012). Workload Characteristic Oriented Scheduler for MapReduce. 2012 IEEE 18th International Conference on Parallel and Distributed Systems, Piscataway: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Wan Nik, W., Zhou, B., Zomaya, A., Abawajy, J. (2011). Efficient Resource Selection Algorithm for Enterprise Grid Systems. 9th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA 2011), Piscataway, USA: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Do, A., Chen, J., Wang, C., Lee, Y., Zomaya, A., Zhou, B. (2011). Profiling Applications for Virtual Machine Placement in Clouds. 2011 IEEE 4th International Conference on Cloud Computing (CLOUD 2011), Los Alamitos, CA: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Yang, P., Zhang, Z., Zhou, B., Zomaya, A. (2011). Sample Subset Optimization for Classifying Imbalanced Biological Data. 15th Pacific-Asia Conference on Advances in Knowledge Discovery and Data Mining, PAKDD 2011, Heidelberg, Germany: Springer. [More Information]
  • Chen, J., Wang, C., Zhou, B., Sun, L., Lee, Y., Zomaya, A. (2011). Tradeoffs between Profit and Customer Satisfaction for Service Provisioning in the Cloud. 20th ACM International Symposium on High-Performance Parallel and Distributed Computing, HPDC'11, New York, USA: Association for Computing Machinery (ACM). [More Information]
  • Lee, Y., Wang, C., Taheri, J., Zomaya, A., Zhou, B. (2010). On the Effect of Using Third-Party Clouds for Maximizing Profit. 10th International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP 2010), Germany: Springer.
  • Lee, Y., Wang, C., Zomaya, A., Zhou, B. (2010). Profit-driven Service Request Scheduling in Clouds. 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing CCGrid 2010, United States: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Chen, G., Jin, H., Zou, D., Zhou, B., Qiang, W., Hu, G. (2010). SHelp: Automatic Self-healing for Multiple Application Instances in a Virtual Machine Environment. 2010 IEEE International Conference on Cluster Computing (CLUSTER 2010), USA: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Wang, P., Zhou, B., Wang, C., Pang, B., Zomaya, A. (2008). A Multi-criteria Phylogenetic Reconstruction Method. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.
  • Yoo, P., Ho, Y., Zhou, B., Zomaya, A. (2008). Adaptive Locality-Effective Kernel Machine for Protein Phosphorylation Site Prediction. 7th IEEE International Workshop on High Performance Computational Biology - HiCOMB 2008, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Wang, P., Zhou, B., Wang, C., Zhao, Z., Zomaya, A. (2008). An Integrative Approach to Phylogenetic Inference. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.
  • Taheri, J., Zomaya, A., Zhou, B. (2008). RBT-I: A Novel Approach for Solving the Multiple Sequence Alignment Problem. 6th IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2008), USA: IEEE Xplore.
  • Alqaralleh, B., Wang, C., Al Mazari, A., Zhou, B., Zomaya, A. (2008). The Effects of Replica Propagation speed on Performance of structured Overlay Networks. The 2008 International Conference on Parallel and Distributed Processing Techniques and Applications, USA: CSREA Press.
  • Wang, P., Zhou, B., Tarawneh, M., Chu, D., Wang, C., Zomaya, A., Brent, R. (2007). A global maximum likelihood super-quartet phylogeny method. The 5th Asia-Pacific Bioinformatics Conference (APBC2007), London, UK: Imperial College Press.
  • Alqaralleh, B., Wang, C., Zhou, B., Zomaya, A. (2007). A Proactive Method for Content Distribution in a Data Indexed DHT Overlay. 2007 International Conference on High Performance Computing and Communications (HPCC 2007), Berlin Heidelberg NewYork: Springer.
  • Wang, C., Zhou, B., Brites, G., Liu, B., Zomaya, A. (2007). Distributing Genome Sequence Databases with a Publish/Subscribe Middleware. First IEEE International Conference on Self-Adaptive and Self-Organizing Systems, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Alqaralleh, B., Wang, C., Zhou, B., Zomaya, A. (2007). Effects of Replica Placement Algorithms on Performance of Structured Overlay Networks. Fourth International Workshop on Hot Topics in Peer-to-Peer Systems (Hot-P2P), USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Tarawneh, M., Zhou, B., Wang, P., Zomaya, A. (2007). Investigation of Relationships among Excavate Taxa Using a New Quartet-based Pyhlogenetic Analysis Method. 21st IEEE International Conference on Advanced Information Networking and Applications (AINA 2007), USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Yoo, P., Zhou, B., Zomaya, A. (2007). Machine Intelligence in Protein Sequence Analysis and Structure Prediction. Conference on Bioinformatics and Computational Biology (BIOCOMP 2007), USA: CSREA Press.
  • Wang, C., Zhou, B., Zomaya, A. (2007). Scaling up Genome Similarity Search Services through Content Distribution. 2007 International Conference on Parallel Processing (ICPP 2007), NJ, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Zhou, B., Tarawneh, M., Wang, P., Chu, D., Wang, C., Zomaya, A., Brent, R. (2006). Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree. Sixth IEEE Symposium on BionInformatics and BioEngineering (BIBE 2006), USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Zhou, B., Tarawneh, M., Chu, D., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). On a New Quartet-Based Phylogeny Reconstruction Algorithm. 2006 International Conference on Bioinformatics and Computational Biology (BIOCOMP'06), USA: CSREA Press.
  • Zhou, B., Chu, D., Tarawneh, M., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). Parallel Implementation of a Quartet-Based Algorithm for Phylogenetic Analysis. 5th IEEE International Workshop on High Performance Computational Biology HiCOMB 2006 in conjunction with 20th International Parallel and Distributed Processing Symposium, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Wang, C., Alqaralleh, B., Zhou, B., Brites, G., Zomaya, A. (2006). Self-Organizing Content Distribution in a Data Indexed DHT Network. Sixth International Conference on Peer-to-Peer Computing (P2P 2006), Los Alamitos, California: (IEEE) Institute of Electrical and Electronics Engineers.
  • Wang, C., Alqaralleh, B., Zhou, B., Till, M., Zomaya, A. (2005). A BLAST Service Built on Data Indexed Overlay Network. First International Conference on e-Science and Grid Computing, Los Alamitos, CA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Zhou, B., Tarawneh, M., Wang, C., Zomaya, A., Brent, R. (2005). A Novel Quartet-Based Method for Phylogenetic Inference. Fifth IEEE Symposium on Bioinformatics and Bioengineering - BIBE 2005, Piscataway, NJ, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Wang, C., Alqaralleh, B., Zhou, B., Till, M., Zomaya, A. (2005). Scheduling BLAST Queries on an Overlay Network. The APAC 2005 Conference and Exhibition on Advanced Computing, Grid Applications and eResearch, Australia: APAC.
  • Zhou, B., Till, M., Zomaya, A., Jermiin, L. (2004). Parallel Implementation Of Maximum Likelihood Methods For Phylogenetic Analysis. 18th International Parallel and Distributed Processing Symposium : IPDPS 2004, Los Alamitos: (IEEE) Institute of Electrical and Electronics Engineers.
  • Till, M., Zhou, B., Zomaya, A., Jermiin, L. (2004). Phylogenetic Analysis Using Maximum Likelihood Methods In Homogeneous Parallel Environments. Fifth International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT 2004), Germany: Springer.
  • Wang, C., Zhou, B., Zomaya, A. (2004). Quartet Based Phylogenetic Inference: A Grid Approach. International Conference on Parallel and Distributed Processing Techniques and Applications. CSREA Press.
  • Zhou, B., McKenzie, B., Hodgson, A. (2003). A web-based graphical interface for general-purpose high-performance computing clusters. International Symposium, ISPA, Berlin: Springer.
  • Zhou, B. (2003). Job relocation: a method to enhance the performance of gang scheduling on clusters of PCs. Fourth International Conference on Parallel and Distributed Computing, Applications and Technologies, Piscataway, NJ: (IEEE) Institute of Electrical and Electronics Engineers.
  • Goscinski, A., Fikkers, P., Zhou, B. (2002). The Development of a Global Scheduling Facility for Clusters Executing Communication Bound Parallel Applications. ISCA 15th International Conference on Parallel and Distributed Computing Systems.
  • Zhou, B., Brent, R. (2001). Gang Scheduling with a Queue for Large Jobs. 15th International Parallel and Distributed Processing Symposium, USA: (IEEE) Institute of Electrical and Electronics Engineers.

2014

  • Yang, P., Yoo, P., Fernando, J., Zhou, B., Zhang, Z., Zomaya, A. (2014). Sample Subset Optimization Techniques for Imbalanced and Ensemble Learning Problems in Bioinformatics Applications. IEEE Transactions on Cybernetics, 44(3), 445-455. [More Information]
  • Zhou, B. (2014). VDB: Virtualizing the On-board Disk Write Cache. 15th International Conference on High Performance Computing and Communications, China: IEEE Computer Society.

2013

  • Li, D., Liao, X., Jin, H., Zhou, B., Zhang, Q. (2013). A new disk I/O model of virtualized cloud environment. IEEE Transactions on Parallel and Distributed Systems, 24(6), 1129-1138. [More Information]
  • Yang, P., Liu, W., Zhou, B., Chawla, S., Zomaya, A. (2013). Ensemble-Based Wrapper Methods for Feature Selection and Class Imbalance Learning. 17th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), Heidelberg: Springer. [More Information]
  • Li, D., Jin, H., Liao, X., Zhang, Y., Zhou, B. (2013). Improving disk I/O performance in a virtualized system. Journal of Computer and System Sciences, 79(2), 187-200. [More Information]
  • Liu, X., Wang, C., Zhou, B., Chen, J., Yang, T., Zomaya, A. (2013). Priority-based consolidation of parallel workloads in the cloud. IEEE Transactions on Parallel and Distributed Systems, 24(9), 1874-1883. [More Information]
  • Chen, G., Jin, H., Zou, D., Zhou, B., Liang, Z., Zheng, W., Shi, X. (2013). SafeStack: Automatically Patching Stack-Based Buffer Overflow Vulnerabilities. IEEE Transactions on Dependable and Secure Computing, 10(6), 368-379. [More Information]
  • Chen, J., Zhou, B., Wang, C., Lu, P., Wang, P., Zomaya, A. (2013). Throughput enhancement through selective time sharing and dynamic grouping. 27th IEEE International Parallel & Distributed Processing Symposium, Piscataway, New Jersey: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]

2012

  • Liu, X., Wang, C., Qiu, X., Zhou, B., Chen, B., Zomaya, A. (2012). Backfilling under Two-tier Virtual Machines. IEEE International Conference on Cluster Computing (CLUSTER), 2012, Los Alamitos: IEEE Xplore. [More Information]
  • Yang, P., Ma, J., Wang, P., Zhu, Y., Zhou, B., Yang, J. (2012). Improving X!Tandem on peptide identification from mass spectrometry by self-boosted percolator. IEEE - ACM Transactions on Computational Biology and Bioinformatics, 9(5), 1273-1280. [More Information]
  • Wang, C., Chen, J., Zhou, B., Zomaya, A. (2012). Just Satisfactory Resource Provisioning for Parallel Applications in the Cloud. 2012 IEEE Eighth World Congress on Services, Los Alamitos: IEEE Computer Society.
  • Lee, Y., Wang, C., Zomaya, A., Zhou, B. (2012). Profit-driven scheduling for cloud services with data access awareness. Journal of Parallel and Distributed Computing, 72(4), 591-602. [More Information]
  • Lu, P., Lee, Y., Wang, C., Zhou, B., Chen, J., Zomaya, A. (2012). Workload Characteristic Oriented Scheduler for MapReduce. 2012 IEEE 18th International Conference on Parallel and Distributed Systems, Piscataway: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]

2011

  • Alqaralleh, B., Wang, C., Zhou, B., Zomaya, A. (2011). A flexible data store for managing bioinformatics data. In Mourad Elloumi, Albert Zomaya (Eds.), Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, (pp. 221-239). Hoboken, New Jersey, USA: Wiley.
  • Wan Nik, W., Zhou, B., Zomaya, A., Abawajy, J. (2011). Efficient Resource Selection Algorithm for Enterprise Grid Systems. 9th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA 2011), Piscataway, USA: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Yang, P., Ho, J., Yang, J., Zhou, B. (2011). Gene-gene interaction filtering with ensemble of filters. BMC Bioinformatics, 12(Supp 1: S10), 1-10. [More Information]
  • Do, A., Chen, J., Wang, C., Lee, Y., Zomaya, A., Zhou, B. (2011). Profiling Applications for Virtual Machine Placement in Clouds. 2011 IEEE 4th International Conference on Cloud Computing (CLOUD 2011), Los Alamitos, CA: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Yoo, P., Zhou, B., Zomaya, A. (2011). Protein Domain Boundary Prediction. In Mourad Elloumi, Albert Zomaya (Eds.), Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, (pp. 501-519). Hoboken, New Jersey, USA: Wiley.
  • Yang, P., Zhang, Z., Zhou, B., Zomaya, A. (2011). Sample Subset Optimization for Classifying Imbalanced Biological Data. 15th Pacific-Asia Conference on Advances in Knowledge Discovery and Data Mining, PAKDD 2011, Heidelberg, Germany: Springer. [More Information]
  • Chen, J., Wang, C., Zhou, B., Sun, L., Lee, Y., Zomaya, A. (2011). Tradeoffs between Profit and Customer Satisfaction for Service Provisioning in the Cloud. 20th ACM International Symposium on High-Performance Parallel and Distributed Computing, HPDC'11, New York, USA: Association for Computing Machinery (ACM). [More Information]

2010

  • Yang, P., Zhang, Z., Zhou, B., Zomaya, A. (2010). A clustering based hybrid system for biomarker selection and sample classification of mass spectrometry data. Neurocomputing, 73(13-15), 2317-2331.
  • Yang, P., Ho, J., Zomaya, A., Zhou, B. (2010). A genetic ensemble approach for gene-gene interaction identification. BMC Bioinformatics, 11(524), 1-15. [More Information]
  • Yang, P., Zhou, B., Zhang, Z., Zomaya, A. (2010). A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data. BMC Bioinformatics, 11(Suppl 1), S5-1-S5-12.
  • Wang, P., Zhou, B., Wang, C., Zomaya, A. (2010). A Novel Integrative Phylogenetic Analysis System. International Journal of Computational Biology and Drug Design, 3(1), 1-14. [More Information]
  • Yang, P., Yang, J., Zhou, B., Zomaya, A. (2010). A Review of Ensemble Methods in Bioinformatics. Current Bioinformatics, 5(4), 296-308.
  • Wang, C., Zhou, B., Zomaya, A. (2010). EvolvingSpace: A Data Centric Framework for Integrating Bioinformatics Applications. IEEE Transactions on Computers, 59(6), 721-734. [More Information]
  • Lee, Y., Wang, C., Taheri, J., Zomaya, A., Zhou, B. (2010). On the Effect of Using Third-Party Clouds for Maximizing Profit. 10th International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP 2010), Germany: Springer.
  • Lee, Y., Wang, C., Zomaya, A., Zhou, B. (2010). Profit-driven Service Request Scheduling in Clouds. 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing CCGrid 2010, United States: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]
  • Chen, G., Jin, H., Zou, D., Zhou, B., Qiang, W., Hu, G. (2010). SHelp: Automatic Self-healing for Multiple Application Instances in a Virtual Machine Environment. 2010 IEEE International Conference on Cluster Computing (CLUSTER 2010), USA: (IEEE) Institute of Electrical and Electronics Engineers. [More Information]

2009

  • Wang, C., Zhou, B., Zomaya, A. (2009). A Decentralized Method for Scaling Up Genome Similarity Search Services. IEEE Transactions on Parallel and Distributed Systems, 20(3), 303-315.
  • Yoo, P., Zhou, B., Zomaya, A. (2009). A modular kernel approach for integrative analysis of protein domain boundaries. BMC Genomics, 10(Suppl 3), S21-1-S21-13.
  • Yang, P., Xu, L., Zhou, B., Zhang, Z., Zomaya, A. (2009). A particle swarm based hybrid system for imbalanced medical data sampling. BMC Genomics, 10(Suppl 3), S34-1-S34-14.

2008

  • Wang, P., Zhou, B., Wang, C., Pang, B., Zomaya, A. (2008). A Multi-criteria Phylogenetic Reconstruction Method. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.
  • Yoo, P., Ho, Y., Zhou, B., Zomaya, A. (2008). Adaptive Locality-Effective Kernel Machine for Protein Phosphorylation Site Prediction. 7th IEEE International Workshop on High Performance Computational Biology - HiCOMB 2008, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Wang, P., Zhou, B., Wang, C., Zhao, Z., Zomaya, A. (2008). An Integrative Approach to Phylogenetic Inference. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.
  • Wang, C., Zomaya, A., Zhou, B. (2008). Data syndication techniques for bioinformatics applications. In Talbi E; Zomaya A Y (Eds.), Grid Computing for Bioinformatics and Computational Biology, (pp. 157-177). New Jersey, USA: John Wiley & Sons.
  • Yoo, P., Sikder, A., Taheri, J., Zhou, B., Zomaya, A. (2008). DomNet: Protein Domain Boundary Prediction Using Enhanced General Regression Network and New Profiles. IEEE Transactions on Nanobioscience, 7(2), 172-181.
  • Yoo, P., Sikder, A., Zhou, B., Zomaya, A. (2008). Improved general regression network for protein domain boundary prediction. BMC Bioinformatics, 9(Supp 1: S12), 1-13. [More Information]
  • Yoo, P., Zhou, B., Zomaya, A. (2008). Machine Learning Techniques for Protein Secondary Structure Prediction: An Overview and Evaluation. Current Bioinformatics, 3(2), 74-86. [More Information]
  • Taheri, J., Zomaya, A., Zhou, B. (2008). RBT-I: A Novel Approach for Solving the Multiple Sequence Alignment Problem. 6th IEEE/ACS International Conference on Computer Systems and Applications (AICCSA 2008), USA: IEEE Xplore.
  • Yoo, P., Ho, Y., Zhou, B., Zomaya, A. (2008). SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles. BMC Bioinformatics, 9(272), 1-17. [More Information]
  • Alqaralleh, B., Wang, C., Al Mazari, A., Zhou, B., Zomaya, A. (2008). The Effects of Replica Propagation speed on Performance of structured Overlay Networks. The 2008 International Conference on Parallel and Distributed Processing Techniques and Applications, USA: CSREA Press.

2007

  • Wang, P., Zhou, B., Tarawneh, M., Chu, D., Wang, C., Zomaya, A., Brent, R. (2007). A global maximum likelihood super-quartet phylogeny method. The 5th Asia-Pacific Bioinformatics Conference (APBC2007), London, UK: Imperial College Press.
  • Alqaralleh, B., Wang, C., Zhou, B., Zomaya, A. (2007). A Proactive Method for Content Distribution in a Data Indexed DHT Overlay. 2007 International Conference on High Performance Computing and Communications (HPCC 2007), Berlin Heidelberg NewYork: Springer.
  • Wang, C., Zhou, B., Brites, G., Liu, B., Zomaya, A. (2007). Distributing Genome Sequence Databases with a Publish/Subscribe Middleware. First IEEE International Conference on Self-Adaptive and Self-Organizing Systems, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Alqaralleh, B., Wang, C., Zhou, B., Zomaya, A. (2007). Effects of Replica Placement Algorithms on Performance of Structured Overlay Networks. Fourth International Workshop on Hot Topics in Peer-to-Peer Systems (Hot-P2P), USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Zhang, Y., Chen, M., Zhou, B., Jermiin, L., Larkum, A. (2007). Evolution of the inner light-harvesting antenna protein family of Cyanobacteria, algae and plants. Journal of Molecular Evolution, 64(3), 321-331. [More Information]
  • Tarawneh, M., Zhou, B., Wang, P., Zomaya, A. (2007). Investigation of Relationships among Excavate Taxa Using a New Quartet-based Pyhlogenetic Analysis Method. 21st IEEE International Conference on Advanced Information Networking and Applications (AINA 2007), USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Yoo, P., Zhou, B., Zomaya, A. (2007). Machine Intelligence in Protein Sequence Analysis and Structure Prediction. Conference on Bioinformatics and Computational Biology (BIOCOMP 2007), USA: CSREA Press.
  • Wang, C., Zhou, B., Zomaya, A. (2007). Scaling up Genome Similarity Search Services through Content Distribution. 2007 International Conference on Parallel Processing (ICPP 2007), NJ, USA: (IEEE) Institute of Electrical and Electronics Engineers.

2006

  • Zhou, B., Tarawneh, M., Wang, P., Chu, D., Wang, C., Zomaya, A., Brent, R. (2006). Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree. Sixth IEEE Symposium on BionInformatics and BioEngineering (BIBE 2006), USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Zhou, B., Tarawneh, M., Chu, D., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). On a New Quartet-Based Phylogeny Reconstruction Algorithm. 2006 International Conference on Bioinformatics and Computational Biology (BIOCOMP'06), USA: CSREA Press.
  • Zhou, B., Chu, D., Tarawneh, M., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). Parallel Implementation of a Quartet-Based Algorithm for Phylogenetic Analysis. 5th IEEE International Workshop on High Performance Computational Biology HiCOMB 2006 in conjunction with 20th International Parallel and Distributed Processing Symposium, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Wang, C., Alqaralleh, B., Zhou, B., Brites, G., Zomaya, A. (2006). Self-Organizing Content Distribution in a Data Indexed DHT Network. Sixth International Conference on Peer-to-Peer Computing (P2P 2006), Los Alamitos, California: (IEEE) Institute of Electrical and Electronics Engineers.

2005

  • Wang, C., Alqaralleh, B., Zhou, B., Till, M., Zomaya, A. (2005). A BLAST Service Built on Data Indexed Overlay Network. First International Conference on e-Science and Grid Computing, Los Alamitos, CA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Zhou, B., Tarawneh, M., Wang, C., Zomaya, A., Brent, R. (2005). A Novel Quartet-Based Method for Phylogenetic Inference. Fifth IEEE Symposium on Bioinformatics and Bioengineering - BIBE 2005, Piscataway, NJ, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Wang, C., Alqaralleh, B., Zhou, B., Till, M., Zomaya, A. (2005). Scheduling BLAST Queries on an Overlay Network. The APAC 2005 Conference and Exhibition on Advanced Computing, Grid Applications and eResearch, Australia: APAC.

2004

  • Zhou, B., Till, M., Zomaya, A., Jermiin, L. (2004). Parallel Implementation Of Maximum Likelihood Methods For Phylogenetic Analysis. 18th International Parallel and Distributed Processing Symposium : IPDPS 2004, Los Alamitos: (IEEE) Institute of Electrical and Electronics Engineers.
  • Till, M., Zhou, B., Zomaya, A., Jermiin, L. (2004). Phylogenetic Analysis Using Maximum Likelihood Methods In Homogeneous Parallel Environments. Fifth International Conference on Parallel and Distributed Computing, Applications and Technologies (PDCAT 2004), Germany: Springer.
  • Wang, C., Zhou, B., Zomaya, A. (2004). Quartet Based Phylogenetic Inference: A Grid Approach. International Conference on Parallel and Distributed Processing Techniques and Applications. CSREA Press.

2003

  • Zhou, B., McKenzie, B., Hodgson, A. (2003). A web-based graphical interface for general-purpose high-performance computing clusters. International Symposium, ISPA, Berlin: Springer.
  • Zhou, B., Brent, R. (2003). An Efficient Method for Computing Eigenvalues of a Real Normal Matrix. Journal of Parallel and Distributed Computing, 63(6), 638-648.
  • Zhou, B., Goscinski, A., Brent, R. (2003). Concerning the Length of Time Slots for Efficient Gang Scheduling. IEICE Transactions on Information and Systems, E86-D(9), 1594-1600.
  • Zhou, B. (2003). Job relocation: a method to enhance the performance of gang scheduling on clusters of PCs. Fourth International Conference on Parallel and Distributed Computing, Applications and Technologies, Piscataway, NJ: (IEEE) Institute of Electrical and Electronics Engineers.

2002

  • Goscinski, A., Fikkers, P., Zhou, B. (2002). The Development of a Global Scheduling Facility for Clusters Executing Communication Bound Parallel Applications. ISCA 15th International Conference on Parallel and Distributed Computing Systems.

2001

  • Zhou, B., Brent, R. (2001). Gang Scheduling with a Queue for Large Jobs. 15th International Parallel and Distributed Processing Symposium, USA: (IEEE) Institute of Electrical and Electronics Engineers.
  • Zhou, B., Brent, R. (2001). On the Development of an Efficient Coscheduling System. In Dror G. Feitelson & Larry Rudolph (Eds.), Job Scheduling Strategies for Parallel Processing: 7th International Workshop, JSSPP 2001, Cambridge, MA, USA., June 16, 2001 Revised Papers, (pp. 103-115). Germany: Springer.

For support on your academic profile contact .