Microbiology

Errata
Item Errata Date
1. Prerequisites have changed for the following unit, they now read:

MEDS2004 Microbes, Infection and Immunity Prerequisites: MEDS2004: BIOL1XX3 or BIOL1XX7 or BIOL1X08 or MEDS1X01 or MBLG1XX1
20/2/2019

MICROBIOLOGY

Advanced coursework and projects will be available in 2020 for students who complete this major.

Microbiology major

A major in Microbiology requires 48 credit points from this table including:
(i) 6 credit points of 1000-level core units
(ii) 6 credit points of 1000-level selective units
(iii) 6 credit points of 2000-level core units
(iv) 6 credit points of 2000-level units according to the following rules:
(a) 6 credit points of 2000-level MIMI coded units or
(b) 6 credit points of 2000-level MEDS coded microbiology units for students in the Medical Science stream
(v) 6 credit points of 3000-level major core units
(vi) 6 credit points of 3000-level interdisciplinary project units
(vii) 12 credit points of 3000-level selective units

Microbiology minor

A minor in Microbiology requires 36 credit points from this table including:
(i) 6 credit points of 1000-level core units
(ii) 6 credit points of 1000-level selective units
(iii) 6 credit points of 2000-level core units
(iv) 6 credit points of 2000-level units according to the following rules:
(a) 6 credit points of 2000-level MIMI coded units or
(b) 6 credit points of 2000-level MEDS coded microbiology units for students in the Medical Science stream
(v) 12 credit points of 3000-level minor core units

Units of study

The units of study are listed below.

1000-level units of study

Core
BIOL1007 From Molecules to Ecosystems

Credit points: 6 Teacher/Coordinator: Dr Emma Thompson Session: Semester 2 Classes: Two lectures per week and online material and 12 x 3-hour practicals Prohibitions: BIOL1907 or BIOL1997 Assumed knowledge: HSC Biology. Students who have not completed HSC Biology (or equivalent) are strongly advised to take the Biology Bridging Course (offered in February). Assessment: Quizzes (10%), communication assessments (40%), skills tests (10%), summative final exam (40%) Mode of delivery: Normal (lecture/lab/tutorial) day
Paradigm shifts in biology have changed the emphasis from single biomolecule studies to complex systems of biomolecules, cells and their interrelationships in ecosystems of life. Such an integrated understanding of cells, biomolecules and ecosystems is key to innovations in biology. Life relies on organisation, communication, responsiveness and regulation at every level. Understanding biological mechanisms, improving human health and addressing the impact of human activity are the great challenges of the 21st century. This unit will investigate life at levels ranging from cells, and biomolecule ecosystems, through to complex natural and human ecosystems. You will explore the importance of homeostasis in health and the triggers that lead to disease and death. You will learn the methods of cellular, biomolecular, microbial and ecological investigation that allow us to understand life and discover how expanding tools have improved our capacity to manage and intervene in ecosystems for our own health and organisms in the environment that surround and support us . You will participate in inquiry-led practicals that reinforce the concepts in the unit. By doing this unit you will develop knowledge and skills that will enable you to play a role in finding global solutions that will impact our lives.
Textbooks
Please see unit outline on LMS
BIOL1907 From Molecules to Ecosystems (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Claudia Keitel Session: Semester 2 Classes: Two lectures per week and online material and 12 x 3-hour practicals Prohibitions: BIOL1007 or BIOL1997 Assumed knowledge: 85 or above in HSC Biology or equivalent Assessment: Quizzes (10%), communication assessments (40%), skills tests (10%), summative exam (40%) Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Department permission required for enrolment
Paradigm shifts in biology have changed the emphasis from single biomolecule studies to complex systems of biomolecules, cells and their interrelationships in ecosystems of life. Such an integrated understanding of cells, biomolecules and ecosystems is key to innovations in biology. Life relies on organisation, communication, responsiveness and regulation at every level. Understanding biological mechanisms, improving human health and addressing the impact of human activity are the great challenges of the 21st century. This unit will investigate life at levels ranging from cells, and biomolecule ecosystems, through to complex natural and human ecosystems. You will explore the importance of homeostasis in health and the triggers that lead to disease and death. You will learn the methods of cellular, biomolecular, microbial and ecological investigation that allow us to understand life and discover how expanding tools have improved our capacity to manage and intervene in ecosystems for our own health and organisms in the environment that surround and support us . This unit of study has the same overall structure as BIOL1007 but material is discussed in greater detail and at a more advanced level. The content and nature of these components may vary from year to year.
Textbooks
Please see unit outline on LMS
BIOL1997 From Molecules to Ecosystems (SSP)

Credit points: 6 Teacher/Coordinator: Dr Emma Thompson Session: Semester 2 Classes: Two lectures per week and online material Prohibitions: BIOL1007 or BIOL1907 Assumed knowledge: 90 or above in HSC Biology or equivalent Assessment: One 2-hour exam (40%), project report which includes written report and presentation (60%) Practical field work: As advised and required by the project; approximately 30-36 hours of research project in the laboratory or field Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Department permission required for enrolment
Paradigm shifts in biology have changed the emphasis from single biomolecule studies to complex systems of biomolecules, cells and their interrelationships in ecosystems of life. Such an integrated understanding of cells, biomolecules and ecosystems is key to innovations in biology. Life relies on organisation, communication, responsiveness and regulation at every level. Understanding biological mechanisms, improving human health and addressing the impact of human activity are the great challenges of the 21st century. This unit will investigate life at levels ranging from cells, and biomolecule ecosystems, through to complex natural and human ecosystems. You will explore the importance of homeostasis in health and the triggers that lead to disease and death. You will learn the methods of cellular, biomolecular, microbial and ecological investigation that allow us to understand life and intervene in ecosystems to improve health. The same theory will be covered as in the advanced stream but in this Special Studies Unit, the practical component is a research project. The research will be a synthetic biology project investigating genetically engineered organisms. Students will have the opportunity to develop higher level generic skills in computing, communication, critical analysis, problem solving, data analysis and experimental design.
Textbooks
Please see unit outline on LMS
Selective
BIOL1006 Life and Evolution

Credit points: 6 Teacher/Coordinator: Dr Matthew Pye, A/Prof Charlotte Taylor Session: Semester 1 Classes: Two lectures per week; 11 x 3-hour lab classes; a field excursion Prohibitions: BIOL1001 or BIOL1911 or BIOL1991 or BIOL1906 or BIOL1996 Assumed knowledge: HSC Biology. Students who have not completed HSC Biology (or equivalent) are strongly advised to take the Biology Bridging Course (offered in February). Assessment: Writing task (10%), laboratory report (20%), laboratory notebook (10%), during semester tests and quizzes (20%), summative final exam (40%) Practical field work: 11 x 3-hour lab classes, a field excursion Mode of delivery: Normal (lecture/lab/tutorial) day
Biology is an immensely diverse science. Biologists study life at all levels, from the fundamental building blocks (genes, proteins) to whole ecosystems in which myriads of species interact. Evolution is the unifying concept that runs through the life sciences, from the origin and diversification of life to understanding behaviour, to dealing with disease. Evolution through natural selection is the framework in biology in which specific details make sense. This unit explores how new species continue to arise while others go extinct and discusses the role of mutations as the raw material on which selection acts. It explains how information is transferred between generations through DNA, RNA and proteins, transformations which affect all aspects of biological form and function. Science builds and organises knowledge of life and evolution in the form of testable hypotheses. You will participate in inquiry-led practical classes investigating single-celled organisms and the diversity of form and function in plants and animals. By doing this unit of study, you will develop the ability to examine novel biological systems and understand the complex processes that have shaped those systems.
Textbooks
Knox, B., Ladiges, P.Y., Evans, B.K., Saint, R. (2014) Biology: an Australian focus, 5e, McGraw-Hill education, North Ryde, N.S.W
BIOL1906 Life and Evolution (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Matthew Pye, A/Prof Charlotte Taylor Session: Semester 1 Classes: Two lectures per week; 11 x 3-hour lab classes; a field excursion Prohibitions: BIOL1001 or BIOL1911 or BIOL1991 or BIOL1006 or BIOL1996 Assumed knowledge: 85 or above in HSC Biology or equivalent. Assessment: Writing task (10%), project report (20%), laboratory notebook (10%), during semester tests and quizzes (20%), summative final exam (40%) Practical field work: 11 x 3-hour lab classes, a field excursion Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Department permission required for enrolment
Biology is an immensely diverse science. Biologists study life at all levels, from the fundamental building blocks (genes, proteins) to whole ecosystems in which myriads of species interact. Evolution is the unifying concept that runs through the life sciences, from the origin and diversification of life to understanding behaviour, to dealing with disease. Evolution through natural selection is the framework in biology in which specific details make sense. This unit explores how new species continue to arise while others go extinct and discusses the role of mutations as the raw material on which selection acts. It explains how information is transferred between generations through DNA, RNA and proteins, transformations which affect all aspects of biological form and function. Science builds and organises knowledge of life and evolution in the form of testable hypotheses. You will participate in inquiry-led practical classes investigating single-celled organisms and the diversity of form and function in plants and animals.
Life and Evolution (Advanced) has the same overall structure as BIOL1006 but material is discussed in greater detail and at a more advanced level. Students enrolled in BIOL1906 participate in a research project with a focus on developing skills in critical evaluation, experimental design, data analysis and communication.
Textbooks
Knox, B., Ladiges, P.Y., Evans, B.K., Saint, R. (2014) Biology: an Australian focus, 5e, McGraw-Hill education, North Ryde, N.S.W
BIOL1996 Life and Evolution (SSP)

Credit points: 6 Teacher/Coordinator: Dr Mark de Bruyn Session: Semester 1 Classes: Lectures as per BIOL1906; one 3-hour practical per week Prohibitions: BIOL1001 or BIOL1911 or BIOL1991 or BIOL1006 or BIOL1906 or BIOL1993 or BIOL1998 Assumed knowledge: 90 or above in HSC Biology or equivalent Assessment: One 2-hour exam (50%), practical reports (25%), seminar presentation (15%), lab note book (5%), prelaboratory quizzes (5%) Practical field work: null Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Department permission required for enrolment
Biology is an immensely diverse science. Biologists study life at all levels, from the fundamental building blocks (genes, and proteins) to whole ecosystems in which myriad species interact. Evolution is the unifying concept that runs through the life sciences, from the origin and diversification of life to understanding behaviour, to dealing with disease. Evolution through natural selection is the framework in biology in which specific details make sense. Science builds and organises knowledge of life and evolution in the form of testable hypotheses. The practical work syllabus for BIOL1996 is different from that of BIOL1906 (Advanced) and consists of a special project-based laboratory.
Textbooks
Please see unit outline on LMS
CHEM1011 Fundamentals of Chemistry 1A

Credit points: 6 Teacher/Coordinator: Dr Toby Hudson Session: Semester 1 Classes: 3x1-hr lectures; 1x1-hr tutorial per week; 1x3-hr practical per week for 9 weeks Prohibitions: CHEM1001 or CHEM1101 or CHEM1901 or CHEM1903 or CHEM1109 or CHEM1111 or CHEM1911 or CHEM1991 Assumed knowledge: There is no assumed knowledge of chemistry for this unit of study but students who have not completed HSC Chemistry (or equivalent) are strongly advised to take the Chemistry Bridging Course (offered in February). Assessment: quizzes, attendance, laboratory log book, exam Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Students who have not completed HSC Chemistry (or equivalent) are strongly advised to take the Chemistry Bridging Course (offered in February, and online year-round, see http://sydney.edu.au/science/chemistry/studying-chemistry/bridging-course.shtml).
Chemistry describes how and why things happen from a molecular perspective. Chemistry underpins all aspects of the natural and physical world, and provides the basis for new technologies and advances in the life, medical and physical sciences, engineering, and industrial processes. This unit of study will equip you with the fundamental knowledge and skills in chemistry for broad application. You will learn about atomic theory, structure and bonding, equilibrium, processes occurring in solutions, and the functional groups of molecules. You will develop experimental design, conduct and analysis skills in chemistry through experiments that ask and answer questions about the chemical nature and processes occurring around you. Through inquiry, observation and measurement, you will better understand natural and physical world and will be able to apply this understanding to real-world problems and solutions. This unit of study is directed toward students whose chemical background is weak (or non-existent). Compared to the mainstream Chemistry 1A, the theory component of this unit begins with more fundamental concepts, and does not cover, or goes into less detail about some topics. Progression to intermediate chemistry from this unit and Fundamentals of Chemistry 1B requires completion of an online supplementary course.
Textbooks
Recommended textbook: Blackman, Bottle, Schmid, Mocerino and Wille,Chemistry, 3rd Edition, 2015 (John Wiley) ISBN: 978-0-7303-1105-8 (paperback) or 978-0-7303-2492-8 (e-text)
CHEM1111 Chemistry 1A

Credit points: 6 Teacher/Coordinator: Dr Toby Hudson Session: Semester 1,Semester 2,Summer Main Classes: 3x1-hr lectures; 1x1-hr tutorial per week; 1x3-hr practical per week for 9 weeks Prohibitions: CHEM1001 or CHEM1101 or CHEM1901 or CHEM1903 or CHEM1109 or CHEM1011 or CHEM1911 or CHEM1991 Assumed knowledge: Students who have not completed HSC Chemistry (or equivalent) and HSC Mathematics (or equivalent) are strongly advised to take the Chemistry and Mathematics Bridging Courses (offered in February) Assessment: quizzes, attendance, laboratory log book, exam Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Students who have not completed secondary school chemistry are strongly advised to instead complete Fundamentals of Chemistry 1A in the first semester of the calendar year (unless you require 12 credit points of Chemistry and are commencing in semester 2). You should also take the Chemistry Bridging Course in advance (offered in February, and online year-round http://sydney.edu.au/science/chemistry/studying-chemistry/bridging-course.shtml).
Chemistry describes how and why things happen from a molecular perspective. Chemistry underpins all aspects of the natural and physical world, and provides the basis for new technologies and advances in the life, medical and physical sciences, engineering, and industrial processes. This unit of study will further develop your knowledge and skills in chemistry for application to life and medical sciences, engineering, and further study in chemistry. You will learn about nuclear and radiation chemistry, wave theory, atomic orbitals, spectroscopy, bonding, enthalpy and entropy, equilibrium, processes occurring in solutions, and the functional groups in carbon chemistry. You will develop experimental design, conduct and analysis skills in chemistry through experiments that ask and answer questions like how do dyes work, how do we desalinate water, how do we measure the acid content in foods, how do we get the blue in a blueprint, and how do we extract natural products from plants? Through inquiry, observation and measurement, you will understand the 'why' and the 'how' of the natural and physical world and will be able to apply this understanding to real-world problems and solutions. This unit of study is directed toward students with a satisfactory prior knowledge of the HSC chemistry course.
Textbooks
Recommended textbook: Blackman, Bottle, Schmid, Mocerino and Wille,Chemistry, 3rd Edition, 2015 (John Wiley) ISBN: 978-0-7303-1105-8 (paperback) or 978-0-7303-2492-8 (e-text)
CHEM1911 Chemistry 1A (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Toby Hudson Session: Semester 1 Classes: 3x1-hr lectures and 1x1-hr tutorial per week; 1x3-hr practical per week for 9 weeks Prohibitions: CHEM1001 or CHEM1101 or CHEM1901 or CHEM1903 or CHEM1109 or CHEM1011 or CHEM1111 or CHEM1991 Assumed knowledge: 80 or above in HSC Chemistry or equivalent Assessment: quizzes, attendance, laboratory log book, exam Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Department permission required for enrolment
Chemistry describes how and why things happen from a molecular perspective. Chemistry underpins all aspects of the natural and physical world, and provides the basis for new technologies and advances in sciences, engineering, and industrial processes. This unit of study will further develop your knowledge and skills in chemistry for broad application, including further study in chemistry. You will learn about nuclear and radiation chemistry, wave theory, atomic orbitals, spectroscopy, bonding, enthalpy and entropy, equilibrium, processes occurring in solutions, and the functional groups of molecules. You will develop experimental design, conduct and analysis skills in chemistry through experiments that ask and answer questions about the chemical nature and processes occurring around you. Through inquiry, observation and measurement, you will better understand natural and physical world and will be able to apply this understanding to real-world problems and solutions. This unit of study is directed toward students with a good secondary performance both overall and in chemistry or science. Students in this category are expected to do this unit rather than Chemistry 1A. Compared to the mainstream Chemistry 1A, the theory component of this unit provides a higher level of academic rigour and makes broader connections between topics.
Textbooks
Recommended textbook: Blackman, Bottle, Schmid, Mocerino and Wille,Chemistry, 3rd Edition, 2015 (John Wiley) ISBN: 978-0-7303-1105-8 (paperback) or 978-0-7303-2492-8 (e-text)
CHEM1991 Chemistry 1A (Special Studies Program)

Credit points: 6 Teacher/Coordinator: Dr Toby Hudson Session: Semester 1 Classes: 3x1-hr lectures; 1x1-hr tutorial per week; 1x3hr practical per week for 12 weeks Prohibitions: CHEM1001 or CHEM1101 or CHEM1901 or CHEM1903 or CHEM1109 or CHEM1011 or CHEM1111 or CHEM1911 Assumed knowledge: 90 or above in HSC Chemistry or equivalent Assessment: quizzes, attendance, presentations, exam Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Department permission required for enrolment
Chemistry describes how and why things happen from a molecular perspective. Chemistry underpins all aspects of the natural and physical world, and provides the basis for new technologies and advances in the life, medical and physical sciences, engineering, and industrial processes. This unit of study will further develop your knowledge and skills in chemistry for application to life and medical sciences, engineering, and further study in chemistry. You will learn about nuclear and radiation chemistry, wave theory, atomic orbitals, spectroscopy, bonding, enthalpy and entropy, equilibrium, processes occurring in solutions, and the functional groups in carbon chemistry. You will develop experimental design, conduct and analysis skills in chemistry in small group projects. The laboratory program is designed to extend students who already have chemistry laboratory experience, and particularly caters for students who already show a passion and enthusiasm for research chemistry, as well as aptitude as demonstrated by high school chemistry results. Entry to Chemistry 1A (Special Studies Program) is restricted to a small number of students with an excellent school record in Chemistry, and applications must be made to the School of Chemistry. The practical work syllabus for Chemistry 1A (Special Studies Program) is very different from that for Chemistry 1A and Chemistry 1A (Advanced) and consists of special project-based laboratory exercises. All other unit of study details are the same as those for Chemistry 1A (Advanced).
Textbooks
Recommended textbook: Blackman, Bottle, Schmid, Mocerino and Wille,Chemistry, 3rd Edition, 2015 (John Wiley) ISBN: 978-0-7303-1105-8 (paperback) or 978-0-7303-2492-8 (e-text)

2000-level units of study

Core
MICR2031 Microbiology

Credit points: 6 Teacher/Coordinator: A/Prof Michael Kertesz Session: Semester 1 Classes: Two 1-hour lectures per week; one 3-hour practical per week; five tutorial sessions Prohibitions: MICR2021 or MICR2921 or MICR2024 or MICR2931 Assumed knowledge: Fundamental concepts of microorganisms, biomolecules and ecosystems; CHEM1XX1 Assessment: Theory 60%: 45-minute mid-semester theory exam (20%) and 1.5-hour theory exam (40%); Practical 40%: written assignment (10%), group oral presentation (20%) and online quizzes (10%) Mode of delivery: Normal (lecture/lab/tutorial) day
Microbes are essential for every aspect of life on the planet. Microbes in the human gut control our digestion and our immune system, microbes in the soil are required for plant growth, microbes in the ocean fix more carbon dioxide than all the earth's trees. This unit of study will investigate the diversity and activity of microorganisms - viruses, bacteria, fungi, algae and protozoa - and look at how they interact with us, each other, plants and animals. You will examine how microbes underpin healthy ecosystems through nutrient cycling and biodegradation, their use industrially in biotechnology and food production, and their ability to cause harm, producing disease, poisoning, pollution and spoilage. Aspects of microbial ecology, nutrition, physiology and genetics will also be introduced. This unit of study will provide you with the breadth of knowledge and skills needed for further studies of microbiology, and will provide the fundamental understanding of microbes that you will require if you specialise in related fields such as biochemistry, molecular biology, immunology, agriculture, nutrition and food sciences, bioengineering and biotechnology, ecology or science education.
Textbooks
Willey et al, Prescott's Microbiology, 10th edition, McGraw-Hill, 2017
MICR2931 Microbiology (Advanced)

Credit points: 6 Teacher/Coordinator: A/Prof Michael Kertesz Session: Semester 1 Classes: Two 1-hour lectures per week; one 3-hour practical per week; five tutorial sessions Prerequisites: A mark of 70 or above in 6cp from (BIOL1XXX or MBLG1XXX) Prohibitions: MICR2021 or MICR2921 or MICR2024 or MICR2031 Assumed knowledge: Fundamental concepts of microorganisms, biomolecules and ecosystems; CHEM1XX1 Assessment: Theory 60%: 45-minute mid-semester theory exam (20%) and 1.5-hour theory exam (40%); Practical 40%: two written assignments (10%, 20%), and online quizzes (10%) Mode of delivery: Normal (lecture/lab/tutorial) day
Microbes are essential for every aspect of life on the planet. Microbes in the human gut control our digestion and our immune system, microbes in the soil are required for plant growth, microbes in the ocean fix more carbon dioxide than all the Earth's trees. In this unit of study you will investigate the diversity and activity of microorganisms - viruses, bacteria, fungi, algae and protozoa - and look at how they interact with us, each other, plants and animals. You will examine how microbes underpin healthy ecosystems through nutrient cycling and biodegradation, their use industrially in biotechnology and food production, and their ability to cause harm, producing disease, poisoning, pollution and spoilage. Detailed aspects of microbial ecology, nutrition, physiology and genetics will also be introduced. This unit of study will provide you with the breadth of knowledge and skills needed for further studies of microbiology, and will provide the fundamental understanding of microbes that you will require to specialise in related fields such as biochemistry, molecular biology, immunology, agriculture, nutrition and food sciences, bioengineering and biotechnology, ecology, or science education. As an Advanced unit, MICR2931 provides increased challenge and academic rigour to develop a greater understanding and depth of disciplinary expertise. You will actively participate in a series of small group tutorials investigating the molecular detail of microbial communication and function, which will culminate in you creating a scientific research report that communicates your understanding of recent research in microbiology.
Textbooks
Willey et al, Prescott's Microbiology, 10th edition, McGraw-Hill, 2017
(MEDS coded units of study are only available to students in the Medical Science stream).
MIMI coded
MIMI2002 Microbes, Infection and Immunity

Credit points: 6 Teacher/Coordinator: Ms Helen Agus Session: Semester 2 Classes: Lectures, online mini-lectures, webinars, discussion forums and self-directed learning activities; Face-to-face seminars, practicals, enquiry-, and scenario-based workshops (5 hours per week for 13 weeks). Prerequisites: (BIOL1XX7 or MBLG1XX1 or BIOL1XX8 or MEDS1X01 or BIOL1XX3) Prohibitions: MEDS2004, BMED2404, MIMI2902, IMMU2101, MICR2021, MICR2921, MICR2022, MICR2922, BMED2807, BMED2808 Assumed knowledge: CHEM1XX1 or CHEM1903 Assessment: Final examination (50%), practical exercises (20%), online quizzes (10%), integrated assessment (20%) Mode of delivery: Normal (lecture/lab/tutorial) day
Transmission, pathogenicity and immune response to microbes are key concepts for understanding infectious disease processes. In this unit of study you will establish a conceptual foundation and, using an integrated approach, explore selected case studies of infection from a body system of origin perspective. You will explore the characteristics of viral, bacterial, fungal and protist pathogens and their virulence mechanisms for establishment and progression of disease. Comprehensive consideration of host immune response and characteristic pathological changes to tissue that arise will then be considered. Upon completion of this unit, you will be able to explain microbial pathogenic processes of infection including: mechanisms for colonisation, invasion and damage to host tissue; the ways in which your immune system recognises and destroys invading microbes; how T cell response is activated and antibodies function. You will learn about pathogenesis, symptoms, current challenges of treatment including antibiotic resistance, control and vaccination strategies. You will develop a holistic perspective of infectious diseases. You will work collaboratively to solve challenging problems in Biomedical Sciences. Practical classes will investigate normal flora, host defences and case studies of medically important microbes with linkage to disease outcome. You will also obtain experience and understanding of modern experimental techniques in microbiology and immunopathology.
MIMI2902 Microbes, Infection and Immunity (Advanced)

Credit points: 6 Teacher/Coordinator: Ms Helen Agus Session: Semester 2 Classes: Lectures, online lecturettes, webinars, discussion forums and self-directed learning activities; Face-to-face seminars, practicals, enquiry- and scenario-based workshops (5 hours per week for 13 weeks). Prerequisites: A mark of 70 or above in (BIOL1XX7 or MBLG1XX1 or BIOL1XX8 or MEDS1X01 or BIOL1XX3) Prohibitions: MEDS2004, BMED2404, MIMI2002, IMMU2101, MICR2021, MICR2921, MICR2022, MICR2922, BMED2807, BMED2808 Assumed knowledge: CHEM1XX1 or CHEM1903 Assessment: Final examination (50%), practical exercises (20%), online quizzes (10%), research publication-based assignment (20%) Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Department permission required for enrolment
Transmission, pathogenicity and immune response to microbes are key concepts for understanding infectious disease processes. In this unit you will establish a conceptual foundation and, using an integrated approach, explore selected infection case studies from a body system of origin perspective. You will explore characteristics of viral, bacterial, fungal and protist pathogens and their virulence mechanisms for establishment and progression of disease. Comprehensive consideration of host immune response and consequent characteristic pathological changes to tissue will be considered. Upon completion, you will be able to explain microbial pathogenic processes of infection including: mechanisms for colonisation, invasion and damage to host tissue; the ways your immune system recognises and destroys invading microbes; how T cell response is activated and antibodies function. You will learn about pathogenesis, symptoms, current challenges of treatment including antibiotic resistance, control and vaccination strategies. This advanced unit has the same overall structure as MIMI2002 but contains a unique science communication exercise in which you will actively participate in small group sessions and be assessed with a short essay. This advanced component explores how recent advances in microbiology, infection and immunity are communicated to the wider public and is based on recent publications with potential high impact for society.
MEDS coded microbiology
MEDS2004 Microbes, Infection and Immunity

Credit points: 6 Teacher/Coordinator: Ms Helen Agus Session: Semester 2 Classes: Online lecturettes, webinars, discussion forums and self-directed learning activities; Face-to-face seminars, practicals, enquiry-, multimedia module- and data analysis-based workshops (5 hours per week for 13 weeks). Prerequisites: BIOL1XX7 or BIOL1X08 or MEDS1X01 or MBLG1XX1 Prohibitions: MIMI2002 or MIMI2902 or MICR2021 or MICR2921 or MICR2022 or MICR2922 or IMMU2101 or BMED2404 or BMED2807 or BMED2808 Assumed knowledge: CHEM1XX1 or CHEM1903 Assessment: Final examination (50%), practical exercises (20%), online quizzes (10%), integrated assessment (20%) Mode of delivery: Normal (lecture/lab/tutorial) day
Transmission, pathogenicity and immune response to microbes are key concepts for understanding infectious disease processes. In this unit of study you will establish a conceptual foundation and, using an integrated approach, explore selected case studies of infection from a body system of origin perspective. You will explore the characteristics of viral, bacterial, fungal and protist pathogens and their virulence mechanisms for establishment and progression of disease. Comprehensive consideration of host immune response and characteristic pathological changes to tissue that arise will then be considered. Upon completion of this unit, you will be able to explain microbial pathogenic processes of infection including: mechanisms for colonisation, invasion and damage to host tissue; the ways in which your immune system recognises and destroys invading microbes; how T cell response is activated and antibodies function. You will learn about pathogenesis, symptoms, current challenges of treatment including antibiotic resistance, control and vaccination strategies. You will develop a holistic perspective of infectious diseases. You will work collaboratively to solve challenging problems in Biomedical Sciences. Practical classes will investigate normal flora, host defences and case studies of medically important microbes with linkage to disease outcome. You will also obtain experience and understanding of modern experimental techniques in microbiology and immunopathology.

3000-level units of study

Major core
MICR3011 Microbes in Infection

Credit points: 6 Teacher/Coordinator: Helen Agus Session: Semester 1 Classes: Two 1-hour lectures per week. Eight 3-hour practical sessions and three 2-hour clinical tutorials per semester Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX or GEGE2X01 or GENE2002) and 6cp from MICR2X22] OR [BMED2401 and BMED2404] Prohibitions: MICR3911 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 2-hour exam; Practical (40%): case study: worksheet, lab work, presentation; one quiz; one 1-hour theory of prac exam Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
This unit is designed to further develop an interest in, and understanding of, medical microbiology from the introduction in Intermediate Microbiology. Through an examination of microbial structure, virulence, body defences and pathogenesis, the process of acquisition and establishment of disease is covered. The unit is divided into three themes: 1. Clinical Microbiology: host defences, infections, virulence mechanisms; 2. Public health microbiology: epidemiology, international public health, transmission, water and food borne outbreaks; 3. Emerging and re-emerging diseases: the impact of societal change with respect to triggering new diseases and causing the re-emergence of past problems, which are illustrated using case studies. The practical component is designed to enhance students' practical skills and to complement the lecture series. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Clinical tutorial sessions underpin and investigate the application of the material covered in the practical classes.
Textbooks
Murray PR et al. Medical Microbiology. 8th edition. Mosby. 2016.
MICR3911 Microbes in Infection (Advanced)

Credit points: 6 Teacher/Coordinator: Helen Agus Session: Semester 1 Classes: Two 1-hour lectures per week including six 1-hour advanced sessions. Eight 3-hour practical sessions and three 2-hour clinical tutorials per semester Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX or GEGE2X01 or GENE2002) and a mark of 70 or above in (MICR2X22 or MIMI2X02)] OR [BMED2401 and a mark of 70 or above in BMED2404] Prohibitions: MICR3011 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 1.5-hour exam (45%), one essay, one in-semester exam; Practical (40%): case study: worksheet, lab work, presentation; quiz; one 1-hour theory of prac exam Mode of delivery: Normal (lecture/lab/tutorial) day
This unit is available to students who have performed well in Intermediate Microbiology. This unit is designed to further develop an interest in, and understanding of, medical microbiology from the introduction in Intermediate Microbiology. Through an examination of microbial structure, virulence, body defences and pathogenesis, the process of acquisition and establishment of disease is covered. The unit is divided into three themes: 1. Clinical Microbiology: host defences, infections, virulence mechanisms; 2. Public health microbiology: epidemiology, international public health, transmission, water and food borne outbreaks; 3. Emerging and re-emerging diseases: the impact of societal change with respect to triggering new diseases and causing the re-emergence of past problems, which are illustrated using case studies. The unique aspect of this advanced unit that differentiates it from the mainstream unit is six tutorial style sessions that replace six mainstream lectures in the theme 'Emerging and re-emerging diseases'. These dedicated research-led interactive advanced sessions support self-directed learning and involve discussion around specific topics that will vary from year to year. Nominated research papers and reviews in the topic area will be explored with supported discussion of the relevance to and impact of the work on current thinking around emergence of microbial disease. The focus will be on microbial change that lies critically at the centre of understanding the reasons for the emergence of new diseases and challenges in an era of significant scientific ability to diagnose and treat infection. The practical component is identical to the mainstream unit and is designed to enhance students' practical skills and to complement the lectures. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Clinical tutorial sessions underpin and investigate the application of the material covered in the practical classes.
Textbooks
Murray PR.et al. Medical Microbiology. 8th ed., Mosby, 2016
Interdisciplinary project
The unit of study MICR3888 is not available in 2019
MICR3888 Microbiology Interdisciplinary Project

Credit points: 6 Teacher/Coordinator: Dr Rosalind Deaker Session: Semester 2 Classes: 2hrs lectures and 3hrs workshop/group work per week Prerequisites: 12 credit points from (MICR2X31 or MIMI2X02 or MEDS2004 or MICR2X22 or BMED2404 or MICR2X21 or MICR2024 or BMED2401 or GEGE2X01 or GENE2002) Assumed knowledge: 2000-level microbiology Assessment: Assignments and written exam (50%), Project report (20%), Project oral presentation (10%), Team work participation and evaluation (20%). Mode of delivery: Block mode
Our ever-changing world requires knowledge that extends across multiple disciplines. The ability to identify and explore interdisciplinary links is a crucial skill for emerging professionals and researchers alike. This unit presents the opportunity to bring together the concepts and skills you have learnt in your discipline and apply them to a real-world problem. For example, you will work on a project that requires a sound understanding of microbiology that sits within an industry-connected or community based problem that is a real challenge for 21st century society. In this unit, you will continue to understand and explore disciplinary knowledge, while also meeting and collaborating with students from across the University through project-based learning; identifying and solving problems, collecting and analysing data and communicating your findings to a diverse audience. All of these skills are highly valued by employers. This unit will foster the ability to work in interdisciplinary teams, and this is essential for both professional and research pathways in future.
SCPU3001 Science Interdisciplinary Project

Credit points: 6 Teacher/Coordinator: Pauline Ross Session: Intensive December,Intensive February,Intensive January,Intensive July,Semester 1,Semester 2 Classes: The unit consists of one seminar/workshop per week with accompanying online materials and a project to be determined in consultation with the partner organisation and completed as part of team with academic supervision. Prerequisites: Completion of 2000-level units required for at least one Science major. Assessment: group plan, group presentation, reflective journal, group project Mode of delivery: Normal (lecture/lab/tutorial) day
This unit is designed for students who are concurrently enrolled in at least one 3000-level Science Table A unit of study to undertake a project that allows them to work with one of the University's industry and community partners. Students will work in teams on a real-world problem provided by the partner. This experience will allow students to apply their academic skills and disciplinary knowledge to a real-world issue in an authentic and meaningful way. Participation in this unit will require students to submit an application to the Faculty of Science.
Selective
MICR3032 Cellular and Molecular Microbiology

Credit points: 6 Teacher/Coordinator: Dr Nick Coleman Session: Semester 2 Classes: Three lectures per week and one 2-hour practical or tutorial per week Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX) and MICR2X22] OR (BMED2401 and BMED2404) OR [12cp from (MICR2024 or MICR2X31 or GEGE2X01 or GENE2002)] Prohibitions: MICR3932 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 1-hour exam (mid semester); one 2-hour exam (end of semester); Prac (40%): One 2-hour exam (open book, mid-semester), one oral presentation (end of semester); one in-prac bioinformatics assessment task, one 1.5 hr bioinformatics prac exam (end of semester) Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
This Unit of Study introduces students to key concepts in cellular and molecular microbiology. The lectures explore areas of microbial evolution, pathogenesis, physiology, ecology, biotechnology and genetics, with each key theme explored with a series of 6 lectures led by an expert in the field. Lectures will be complemented with practical/tutorial sessions that explore recent research in these areas. The first set of practical/tutorial sessions are small-group sessions led by demonstrators, that are focused on critical interpretation of the scientific literature in the area of host-microbe interactions. The focus is on experimental design, and analysis of the raw data. The second set of pracs are bioinformatics labs, which introduce software such as ORF Finder, BLAST, ClustalX, and TreeView and databases such as NCBI-Nucleotide and KEGG; the aim is to figure out the identity, functions, and biotechnological applications of a mystery piece of microbial DNA. It is recommended that students also take the complementary unit of study MICR3042 or MICR3942.
MICR3932 Cellular and Molecular Microbiology (Adv)

Credit points: 6 Teacher/Coordinator: Dr Nick Coleman Session: Semester 2 Classes: Three lectures per week and one 2-hour prac/tute per week Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX) and a mark of 70 or above in MICR2X22] OR [BMED2401 and BMED2404 and a mark of 70 or above in 6cp from (BMED2401 or BMED2404)] OR [6cp from (MICR2024 or MICR2X31) and a mark of 70 or above in 6cp from (GEGE2X01 or GENE2002)] Prohibitions: MICR3032 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 1-hour theory exam (mid semester); one 2-hour exam (end of semester); Prac (40%): one written assessment task, assessment of website. Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
This unit of study introduces students to key concepts in cellular and molecular microbiology. The lectures explore areas of microbial evolution, pathogenesis, physiology, ecology, biotechnology and genetics, with each key theme explored with a series of 6 lectures led by an expert in the field.The first set of practical/tutorial sessions are small-group sessions led by an academic, which are focused on critical interpretation of the scientific literature in the area of host-microbe interactions. The focus is on evaluating the scientific significance of published papers, and determining the level of experimental support for key conclusions. The second set of prac sessions teaches the creative presentation of science to both fellow scientists and the public by designing a website around an area of interest in microbiology. It is recommended that students also take the complementary unit of study, MICR3042 or MICR3942.
Textbooks
None
MICR3042 Microbiology Research Skills

Credit points: 6 Teacher/Coordinator: Prof Dee Carter Session: Semester 2 Classes: Two lectures per week from week 1-7, one 4-hour practical per week. Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX) and MICR2X22] OR (BMED2401 and BMED2404) OR [12cp from (MICR2024 or MICR2X31 or GEGE2X01 or GENE2002)] Prohibitions: MICR3942 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Two 40-min in-semester theory exams (20% each). One 1-hour theory of prac exam (20%). In-lab continuous assessment, two prac reports, one short video presentation (40%). Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
Research in molecular microbiology is needed to tackle problems in medicine, agriculture, environmental science, and biotechnology. This Unit of Study focuses on developing practical skills and training in experimental approaches and that are essential for laboratory research in molecular microbiology, together with knowledge of the underlying theoretical concepts. We will focus on key areas of modern microbiology including Bioremediation, where micro-organisms are used to break down harmful substrates in the environment; Microbial biotechnology, which explores how microbes can be used as cellular factories to produce useful products; Medical microbiology, where molecular epidemiology is used to track a disease outbreak, and Yeast genetics, where we explore genes and protein interaction networks that cells regulate in their response to antibiotic agents. It is strongly recommended that students also take the complementary unit of study MICR3032 or MICR3932.
MICR3942 Microbiology Research Skills (Adv)

Credit points: 6 Teacher/Coordinator: Prof Dee Carter Session: Semester 2 Classes: Two lectures per week from Week 1-7. Project work equivalent to 4 hours per week. Research project in an academic microbiology lab, 48 hours total, at times decided between student and supervisor. Research projects will be announced at the start of semester. Prerequisites: 6cp from (BIOL1XX7 or MBLGXXXX) and a mark of 75 or above in MICR2X22] OR [BMED2401 and BMED2404 and a mark of 75 or above in 6cp from (BMED2401 or BMED2404)] OR [6cp from (MICR2024 or MICR2X31) and a mark of 75 or above in 6cp from (GEGE2X01 or GENE2002)] Prohibitions: MICR3022 or MICR3922 or MICR3042 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Two 40-min in-semester theory of prac exams (20% each). Two reports, presentation of research via short video, supervisor mark based on performance in research project (60%). Practical field work: Research project in an academic microbiology lab, 48 hours total, at times decided between student and supervisor. Research projects will be announced at the start of semester. Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
Research in molecular microbiology is needed to tackle problems in medicine, agriculture, environmental science, and biotechnology. This Unit of Study focuses on developing practical skills and training in experimental approaches that are essential for laboratory research in molecular microbiology, together with knowledge of the underlying theoretical concepts. In this Unit the practical component is entirely replaced by a research project undertaken in an academic microbiology lab. The lecture material in MICR3942 focuses on the areas of microbial biotechnology and bioremediation, and the genetic and molecular diversity of medically important eukaryotic microbes. It is strongly recommended that students also take the complementary unit of study, MICR3032 or MICR3932.
VIRO3001 Virology

Credit points: 6 Teacher/Coordinator: Dr Tim Newsome Session: Semester 1 Classes: 26 1-hour lectures, seven 4-hour practical classes, one 2-hour tutorial Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX) and 6cp from (BCHM2XXX or BCMB2X01 or BIOL2XXX or GEGE2X01 or GENE2002 or IMMU2101 or MICR2XXX or PCOL2X0X or PHSI2X0X)] OR [BMED2401 and BMED2404] Prohibitions: VIRO3901 Assumed knowledge: Fundamental concepts of microorganisms, biomolecules and ecosystems Assessment: Pre-class assessment for practical classes: (5 x 1%), continuous assessment for practical classes: (3 x 2%), project assessment for practical classes: (7%), presentation on virology-themed research literature: (7%), theory of practical exam: (15%) (30 minutes), theory exam (60%) (120 minutes). Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Students are strongly advised to complete VIRO3001 or VIRO3901 before enrolling in VIRO3002 or VIRO3902. BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
Viruses are some of the simplest biological machinery known yet they are also the etiological agents for some of the most important human diseases. New technologies that have revolutionised the discovery of viruses are also revealing a hitherto unappreciated abundance and diversity in the ecosphere, and a wider role in human health and disease. Developing new gene technologies have enabled the use of viruses as therapeutic agents, in novel vaccine approaches, gene delivery and in the treatment of cancer. This unit of study is designed to introduce students who have a basic understanding of molecular biology to the rapidly evolving field of virology. Viral infection in plant and animal cells and bacteria is covered by an examination of virus structure, genomes, gene expression and replication. Building upon these foundations, this unit progresses to examine host-virus interactions, pathogenesis, cell injury, the immune response and the prevention and control of infection and outbreaks. The structure and replication of sub-viral agents: viroids and prions, and their role in disease are also covered. The practical component provides hands-on experience in current diagnostic and research techniques such as molecular biology, cell culture, serological techniques, immunofluorescence and immunoblot analyses and is designed to enhance the students' practical skills and complement the lecture series. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Tutorials cover a range of topical issues and provide a forum for students to develop their communication and critical thinking skills. The unit will be taught by the Discipline of Microbiology within the School of Life and Environmental Sciences with the involvement of the Discipline of Infectious Diseases and Immunology within the Sydney Medical School.
Textbooks
Knipe and Howley. Fields Virology. 6th edition 2013. Available freely as an electronic resource from the University of Sydney library.
VIRO3901 Virology (Advanced)

Credit points: 6 Teacher/Coordinator: Dr Tim Newsome Session: Semester 1 Classes: 29 1-hour lectures, seven 4-hour practical classes, four 1-hour tutorials Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX) and a mark of 70 or above in 6cp from (BCHM2XXX or BCMB2X01 or BIOL2XXX or GEGE2X01 or GENE2002 or IMMU2101 or MICR2XXX or PCOL2X0X or PHSI2X0X)] OR [BMED2401 and a mark of 70 or above in BMED2404] Prohibitions: VIRO3001 Assumed knowledge: Fundamental concepts of microorganisms, biomolecules and ecosystems Assessment: Pre-class assessment for practical classes: (5 x 1%), continuous assessment for practical classes: (3 x 2%), project assessment for practical classes: (7%), individual presentation on virology-themed research literature: (7%), theory of practical exam: (15%) (30 minutes), theory exam: (60%) (120 minutes) Mode of delivery: Normal (lecture/lab/tutorial) day
Note: Students are strongly advised to complete VIRO3001 or VIRO3901 before enrolling in VIRO3002 or VIRO3902. BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
This unit is available to students who have performed well in Intermediate Microbiology and is based on VIRO3001 with additional lectures related to the research interests in the Discipline. Consequently, the unit of study content may change from year to year. Viruses are some of the simplest biological machinery known yet they are also the etiological agents for some of the most important human diseases. New technologies that have revolutionised the discovery of viruses are also revealing a hitherto unappreciated abundance and diversity in the ecosphere, and a wider role in human health and disease. Developing new gene technologies have enabled the use of viruses as therapeutic agents, in novle vaccine approaches, gene delivery and in the treatment of cancer. This unit of study is designed to introduce students who have a basic understanding of molecular biology to the rapidly evolving field of virology. Viral infection in plant and animal cells and bacteria is covered by an examination of virus structure, genomes, gene expression and replication. Building upon these foundations, this unit progresses to examine host-virus interactions, pathogenesis, cell injury, the immune response and the prevention and control of infection and outbreaks. The structure and replication of sub-viral agents: viroids and prions, and their role in disease are also covered. The practical component provides hands-on experience in current diagnostic and research techniques such as molecular biology, cell culture, serological techniques, immunofluroescence and immunoblot analyses and is designed to enhance the students' practical skills and complement the lecture series. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Advanced lectures cover cutting-edge research in the field of virology in small group discussions and presentations that provide a forum for students to develop their communication and critical thinking skills. The unit will be taught by the Discipline of Microbiology within the School of Life and Environmental Sciences with the involvement of the Discipline of Infectious Diseases and Immunology within the Sydney Medical School.
Textbooks
Knipe and Howley. Fields Virology. 6th edition 2013. Available freely as an electronic resource from the University of Sydney library.
Minor core
MICR3011 Microbes in Infection

Credit points: 6 Teacher/Coordinator: Helen Agus Session: Semester 1 Classes: Two 1-hour lectures per week. Eight 3-hour practical sessions and three 2-hour clinical tutorials per semester Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX or GEGE2X01 or GENE2002) and 6cp from MICR2X22] OR [BMED2401 and BMED2404] Prohibitions: MICR3911 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 2-hour exam; Practical (40%): case study: worksheet, lab work, presentation; one quiz; one 1-hour theory of prac exam Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
This unit is designed to further develop an interest in, and understanding of, medical microbiology from the introduction in Intermediate Microbiology. Through an examination of microbial structure, virulence, body defences and pathogenesis, the process of acquisition and establishment of disease is covered. The unit is divided into three themes: 1. Clinical Microbiology: host defences, infections, virulence mechanisms; 2. Public health microbiology: epidemiology, international public health, transmission, water and food borne outbreaks; 3. Emerging and re-emerging diseases: the impact of societal change with respect to triggering new diseases and causing the re-emergence of past problems, which are illustrated using case studies. The practical component is designed to enhance students' practical skills and to complement the lecture series. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Clinical tutorial sessions underpin and investigate the application of the material covered in the practical classes.
Textbooks
Murray PR et al. Medical Microbiology. 8th edition. Mosby. 2016.
MICR3911 Microbes in Infection (Advanced)

Credit points: 6 Teacher/Coordinator: Helen Agus Session: Semester 1 Classes: Two 1-hour lectures per week including six 1-hour advanced sessions. Eight 3-hour practical sessions and three 2-hour clinical tutorials per semester Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX or GEGE2X01 or GENE2002) and a mark of 70 or above in (MICR2X22 or MIMI2X02)] OR [BMED2401 and a mark of 70 or above in BMED2404] Prohibitions: MICR3011 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 1.5-hour exam (45%), one essay, one in-semester exam; Practical (40%): case study: worksheet, lab work, presentation; quiz; one 1-hour theory of prac exam Mode of delivery: Normal (lecture/lab/tutorial) day
This unit is available to students who have performed well in Intermediate Microbiology. This unit is designed to further develop an interest in, and understanding of, medical microbiology from the introduction in Intermediate Microbiology. Through an examination of microbial structure, virulence, body defences and pathogenesis, the process of acquisition and establishment of disease is covered. The unit is divided into three themes: 1. Clinical Microbiology: host defences, infections, virulence mechanisms; 2. Public health microbiology: epidemiology, international public health, transmission, water and food borne outbreaks; 3. Emerging and re-emerging diseases: the impact of societal change with respect to triggering new diseases and causing the re-emergence of past problems, which are illustrated using case studies. The unique aspect of this advanced unit that differentiates it from the mainstream unit is six tutorial style sessions that replace six mainstream lectures in the theme 'Emerging and re-emerging diseases'. These dedicated research-led interactive advanced sessions support self-directed learning and involve discussion around specific topics that will vary from year to year. Nominated research papers and reviews in the topic area will be explored with supported discussion of the relevance to and impact of the work on current thinking around emergence of microbial disease. The focus will be on microbial change that lies critically at the centre of understanding the reasons for the emergence of new diseases and challenges in an era of significant scientific ability to diagnose and treat infection. The practical component is identical to the mainstream unit and is designed to enhance students' practical skills and to complement the lectures. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Clinical tutorial sessions underpin and investigate the application of the material covered in the practical classes.
Textbooks
Murray PR.et al. Medical Microbiology. 8th ed., Mosby, 2016
MICR3032 Cellular and Molecular Microbiology

Credit points: 6 Teacher/Coordinator: Dr Nick Coleman Session: Semester 2 Classes: Three lectures per week and one 2-hour practical or tutorial per week Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX) and MICR2X22] OR (BMED2401 and BMED2404) OR [12cp from (MICR2024 or MICR2X31 or GEGE2X01 or GENE2002)] Prohibitions: MICR3932 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 1-hour exam (mid semester); one 2-hour exam (end of semester); Prac (40%): One 2-hour exam (open book, mid-semester), one oral presentation (end of semester); one in-prac bioinformatics assessment task, one 1.5 hr bioinformatics prac exam (end of semester) Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
This Unit of Study introduces students to key concepts in cellular and molecular microbiology. The lectures explore areas of microbial evolution, pathogenesis, physiology, ecology, biotechnology and genetics, with each key theme explored with a series of 6 lectures led by an expert in the field. Lectures will be complemented with practical/tutorial sessions that explore recent research in these areas. The first set of practical/tutorial sessions are small-group sessions led by demonstrators, that are focused on critical interpretation of the scientific literature in the area of host-microbe interactions. The focus is on experimental design, and analysis of the raw data. The second set of pracs are bioinformatics labs, which introduce software such as ORF Finder, BLAST, ClustalX, and TreeView and databases such as NCBI-Nucleotide and KEGG; the aim is to figure out the identity, functions, and biotechnological applications of a mystery piece of microbial DNA. It is recommended that students also take the complementary unit of study MICR3042 or MICR3942.
MICR3932 Cellular and Molecular Microbiology (Adv)

Credit points: 6 Teacher/Coordinator: Dr Nick Coleman Session: Semester 2 Classes: Three lectures per week and one 2-hour prac/tute per week Prerequisites: [6cp from (BIOL1XX7 or MBLGXXXX) and a mark of 70 or above in MICR2X22] OR [BMED2401 and BMED2404 and a mark of 70 or above in 6cp from (BMED2401 or BMED2404)] OR [6cp from (MICR2024 or MICR2X31) and a mark of 70 or above in 6cp from (GEGE2X01 or GENE2002)] Prohibitions: MICR3032 Assumed knowledge: MICR2X21 or MICR2024 or MICR2X31 Assessment: Theory (60%): One 1-hour theory exam (mid semester); one 2-hour exam (end of semester); Prac (40%): one written assessment task, assessment of website. Mode of delivery: Normal (lecture/lab/tutorial) day
Note: BMedSc degree students: You must have successfully completed BMED2401 and an additional 12cp from BMED240X before enrolling in this unit.
This unit of study introduces students to key concepts in cellular and molecular microbiology. The lectures explore areas of microbial evolution, pathogenesis, physiology, ecology, biotechnology and genetics, with each key theme explored with a series of 6 lectures led by an expert in the field.The first set of practical/tutorial sessions are small-group sessions led by an academic, which are focused on critical interpretation of the scientific literature in the area of host-microbe interactions. The focus is on evaluating the scientific significance of published papers, and determining the level of experimental support for key conclusions. The second set of prac sessions teaches the creative presentation of science to both fellow scientists and the public by designing a website around an area of interest in microbiology. It is recommended that students also take the complementary unit of study, MICR3042 or MICR3942.
Textbooks
None