You are here: Home / Our people / Our academics / Associate Professor Jonathan Arthur 

Publications list for Associate Professor Jonathan Arthur

2011 | 2010 | 2009 | 2008 | 2007 | 2006

2011

   
  • Liao, W., Arthur, J. (2011), Predicting peptide binding to Major Histocompatibility Complex molecules. Autoimmunity reviews. 10(8), 469-73. [Abstract]
  • Liao, W., Arthur, J. (2011), Predicting Peptide binding affinities to MHC molecules using a modified semi-empirical scoring function. PLoS One. 6(9), e25055. [Abstract]

2010

   
Back to Top
  • Wang, P., Yang, P., Arthur, J., Yee Hwa Yang, J. (2010), A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data. Bioinformatics (Oxford, England). 26(18), 2242-9. [Abstract]
  • Fung, C., Naughton, S., Turnbull, L., Tingpej, P., Rose, B., Arthur, J., Hu, H., Harmer, C., Harbour, C., Hassett, D., Whitchurch, C., Manos, J. (2010), Gene expression of Pseudomonas aeruginosa in a mucin-containing synthetic growth medium mimicking CF lung sputum. Journal of medical microbiology. 59(Pt 9), 1089-100. [Abstract]
  • Austin, C., Mailu, B., Maghzal, G., Sanchez-Perez, A., Rahlfs, S., Zocher, K., Yuasa, H., Arthur, J., Becker, K., Stocker, R., Hunt, N., Ball, H. (2010), Biochemical characteristics and inhibitor selectivity of mouse indoleamine 2,3-dioxygenase-2. Amino acids. 39(2), 565-78. [Abstract]
  • Lam, L., Tsoutsman, T., Arthur, J., Semsarian, C. (2010), Differential protein expression profiling of myocardial tissue in a mouse model of hypertrophic cardiomyopathy. Journal of molecular and cellular cardiology. 48(5), 1014-22. [Abstract]
  • McHugh, L., Arthur, J. (2010), Harvest: an open-source tool for the validation and improvement of peptide identification metrics and fragmentation exploration. BMC Bioinformatics. 11, 448. [Abstract]
  • Arthur, J., Reichardt, J. (2010), Modeling Single Nucleotide Polymorphisms in the Human AKR1C1 and AKR1C2 Genes: Implications for Functional and Genotyping Analyses. PloS one. 5(12), e15604. [Abstract]
  • Gandhi, K., McKay, F., Diefenbach, E., Crossett, B., Schibeci, S., Heard, R., Stewart, G., Booth, D., Arthur, J. (2010), Novel approaches to detect serum biomarkers for clinical response to interferon-beta treatment in multiple sclerosis. PLoS One. 5(5), e10484. [Abstract]
  • Musumeci, L., Arthur, J., Cheung, F., Hoque, A., Lippman, S., Reichardt, J. (2010), Single Nucleotide Differences (SNDs) in the dbSNP Database May Lead to Errors in Genotyping and Haplotyping Studies. Human Mutation. 31(1), 67-73. [Abstract]

2009

   
Back to Top
  • Manos, J., Arthur, J., Rose, B., Bell, S., Tingpej, P., Hu, H., Webb, J., Kjelleberg, S., Gorrell, M., Bye, P., Harbour, C. (2009), Gene expression characteristics of a cystic fibrosis epidemic strain of Pseudomonas aeruginosa during biofilm and planktonic growth. FEMS Microbiology Letters. 292(1), 107-114. [Abstract]
  • McHugh, L., Arthur, J. (2009), Using Neural Networks to Identify More Proteins in High-Throughput Proteomics. United States: IEEE, .

2008

   
Back to Top
  • Manos, J., Arthur, J., Rose, B., Tingpej, P., Fung, C., Curtis, M., Webb, J., Hu, H., Kjelleberg, S., Gorrell, M., Bye, P., Harbour, C. (2008), Transcriptome analyses and biofilm-forming characteristics of a clonal Pseudomonas aeruginosa from the cystic fibrosis lung. Journal of medical microbiology. 57(12), 1454-1465. [Abstract]
  • Wilkins, M., Arthur, J., Junius, F., Harrison, M., Traini, M., Bizannes, P., Doggett, P., McDonald, W. (2008), Information management for proteomics: a perspective. Expert Review of Proteomics. 5(5), 663-678. [Abstract]
  • Gandhi, K., McKay, F., Schibeci, S., Arthur, J., Heard, R., Stewart, G., Booth, D. (2008), BAFF is a Biological Response Marker to IFN-beta Treatment in Multiple Sclerosis. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research. 28(9), 529-39. [Abstract]
  • McHugh, L., Arthur, J. (2008), Computational methods for protein identification from mass spectrometry data. PLoS computational biology. 4(2), e12-e24. [Abstract]
  • Arthur, J. (2008), Identification and characterization of microbial proteins using peptide mass fingerprinting strategies. Methods in molecular medicine. 141, 257-270. [Abstract]
  • Arthur, J. (2008), GENOME INFORMATICS 2008 Genome Informatics Series Vol. 21 Proceedings of the 19th International Conference. United Kingdom: Imperial College Press, .

2007

   
Back to Top
  • Cattley, S., Arthur, J. (2007), BioManager: the use of a bioinformatics web application as a teaching tool in undergraduate bioinformatics training. Briefings in bioinformatics. 8(6), 457-465. [Abstract]
  • Lam, L., Arthur, J., Semsarian, C. (2007), Proteome map of the normal murine ventricular myocardium. Proteomics. 7, 3629-33. [Abstract]
  • Chiu, C., Tebo, M., Ingles, J., Yeates, L., Arthur, J., Lind, J., Semsarian, C. (2007), Genetic screening of calcium regulation genes in familial hypertrophic cardiomyopathy. Journal of molecular and cellular cardiology. 43, 337-43. [Abstract]

2006

   
Back to Top
  • Arthur, J., Sanchez-Perez, A., Cook, D. (2006), Scoring of predicted GRK2 phosphorylation sites in Nedd4-2. Bioinformatics (Oxford, England). 22, 2192-5. [Abstract]