2013

• Hazelton, B., Thomas, L., Unver, T., Iredell, J. (2013), Rapid Identification of Gram Positive Pathogens and their Resistance Genes from Positive Blood Culture Broth Using a Multiplex Real-Time Polymerase Chain Reaction Assay. Journal of Medical Microbiology. 62(Pt 2), 223-231. [Abstract]
• Blyth, C., Webb, S., Kok, J., Dwyer, D., van Hal, S., Foo, H., Ginn, A., Kesson, A., Seppelt, I., Iredell, J. (2013), The impact of bacterial and viral co-infection in severe influenza. Influenza and Other Respiratory Viruses. 7(2), 168-176. [Abstract]
• Kok, J., Blyth, C., Foo, H., Bailey, M., Pilcher, D., Webb, S., Seppelt, I., Dwyer, D., Iredell, J. (2013), Viral Pneumonitis Is Increased in Obese Patients during the First Wave of Pandemic A(H1N1) 2009 Virus. PloS One. 8(2), e55631. [Abstract]
• Kok, J., Chen, S., Dwyer, D., Iredell, J. (2013), Current status of matrix-assisted laser desorption ionisation-time of flight mass spectrometry in the clinical microbiology laboratory. Pathology. 45(1), 4-17. [Abstract]

2012

• Partridge, S., Iredell, J. (2012), Genetic Contexts of blaNDM-1. Antimicrobial Agents and Chemotherapy. 56(11), 6065-6067. [Abstract]
• Marais, B., Crawford, J., Iredell, J., Ward, M., Simpson, S., Gilbert, L., Griffiths, P., Kamradt-Scott, A., Colagiuri, R., Jones, C., Sorrell, T. (2012), One world, one health: beyond the Millennium Development Goals. Lancet. , 805-806. [Abstract]
• Partridge, S., Ginn, A., Paulsen, I., Iredell, J. (2012), pEl1573 carrying blaIMP-4, from Sydney, Australia, is closely related to other IncL/M plasmids. Antimicrobial Agents and Chemotherapy. 56(11), 6029-6032. [Abstract]
• Partridge, S., Paulsen, I., Iredell, J. (2012), pJIE137 Carrying blaCTX-M-62 Is Closely Related to p271A Carrying blaNDM-1. Antimicrobial Agents and Chemotherapy. 56(4), 2166-2168. [Abstract]
• Ginn, A., Wiklendt, A., Gidding, H., George, N., O'Driscoll, J., Partridge, S., O'Toole, B., Perri, R., Faoagali, J., Gallagher, J., Lipman, J., Iredell, J. (2012), The Ecology of Antibiotic Use in the ICU: Homogeneous Prescribing of Cefepime but Not Tazocin Selects for Antibiotic Resistant Infection. PLoS One. 7(6), e38719. [Abstract]

2011

• Partridge, S., Ellem, J., Tetu, S., Zong, Z., Paulsen, I., Iredell, J. (2011), Complete sequence of pJIE143, a pir-type plasmid carrying ISEcp1-blaCTX-M-15 from an Escherichia coli ST131 isolate. Antimicrobial Agents and Chemotherapy. 55(12), 5933-5935. [Abstract]
• Partridge, S., Zong, Z., Iredell, J. (2011), Recombination in IS26 and Tn2 in the evolution of multi-resistance regions carrying blaCTX-M-15 on conjugative IncF plasmids from Escherichia coli. Antimicrobial Agents and Chemotherapy. 55(11), 4971-4978. [Abstract]
• Khawaldeh, A., Morales, S., Dillon, B., Alavidze, Z., Ginn, A., Thomas, L., Chapman, S., Dublanchet, A., Smithyman, A., Iredell, J. (2011), Bacteriophage therapy for refractory Pseudomonas aeruginosa urinary tract infection. Journal of Medical Microbiology. 60(Pt 11), 1697-1700. [Abstract]
• Mascarelli, P., Iredell, J., Maggi, R., Weinberg, G., Breitschwerdt, E. (2011), Bartonella species bacteremia in two patients with epitheliod hemangioendothelioma. Journal of Clinical Microbiology. 49(11), 4006-4012. [Abstract]
• Lawson, T., Connally, R., Vemulpad, S., Piper, J., Iredell, J. (2011), In reference to targeted imaging modality selection for bacterial biofilms in chronic rhinosinusitis and different biofilms, different disease? a clinical outcomes study. The Laryngoscope. , 2043-2044. [Abstract]
• Ellem, J., Partridge, S., Iredell, J. (2011), Efficient direct ESBL detection by multiplex real-time PCR: accurate assignment of phenotype using a limited set of genetic markers. Journal of Clinical Microbiology. 49(8), 3074-3077. [Abstract]
• Betteridge, T., Partridge, S., Iredell, J., Stokes, H. (2011), Genetic context and structural diversity of class 1 integrons from human commensal bacteria in a hospital intensive care unit. Antimicrobial Agents and Chemotherapy. 55(8), 3939-3943. [Abstract]
• Partridge, S., Thomas, L., Ginn, A., Wiklendt, A., Kyme, P., Iredell, J. (2011), A novel gene cassette, aacA43, in a plasmid-borne class 1 integron. Antimicrobial Agents and Chemotherapy. 55(6), 2979-2982. [Abstract]
• Tsafnat, G., Schaeffer, J., Clayphan, A., Iredell, J., Partridge, S., Coiera, E. (2011), Computational inference of grammars for larger-than-gene structures from annotated gene sequences. Bioinformatics. 27(6), 791-796. [Abstract]
• Pinto, A., Halliday, C., Zahra, M., van Hal, S., Olma, T., Maszewska, K., Iredell, J., Meyer, W., Chen, S. (2011), Matrix-assisted laser desorption ionization-time of flight mass spectrometry identification of yeasts is contingent on robust reference spectra. PLoS One. 6(10), e25712. [Abstract]
• Lawson, T., Connally, R., Iredell, J., Piper, J. (2011), The Simultaneous Detection and Differentiation of Staphylococcus Species in Blood Cultures Using Fluorescence in situ Hybridization: A Comment. Medical Principles and Practice. 20(4), 390-391. [Abstract]
• Kok, J., Thomas, L., Olma, T., Chen, S., Iredell, J. (2011), Identification of bacteria in blood culture broths using matrix-assisted laser desorption-ionization sepsityper™ and time of flight mass spectrometry. PLoS One. 6(8), e23285. [Abstract]
• Lawson, T., Connally, R., Iredell, J., Vemulpad, S., Piper, J. (2011), Detection of Staphylococcus aureus with a fluorescence in situ hybridization that does not require lysostaphin. Journal of Clinical Laboratory Analysis. 25(2), 142-147. [Abstract]

2010

• Zong, Z., Partridge, S., Iredell, J. (2010), ISEcp1-mediated transposition and homologous recombination can explain the context of blaCTX-M-62 linked to qnrB2. Antimicrobial agents and chemotherapy. 54(7), 3039-42. [Abstract]
• Iredell, J., Partridge, S. (2010), Understanding the Shared Bacterial Genome. In: Infectious disease informatics. (pp.245-261).United States: Springer.
• Szewczuk, E., Thapa, K., Anninos, T., McPhie, K., Higgins, G., Dwyer, D., Stanley, K., Iredell, J. (2010), Rapid semi-automated quantitative multiplex tandem PCR (MT-PCR) assays for the differential diagnosis of influenza-like illness. BMC Infectious Diseases. 10(1), 113. [Abstract]
• Kok, J., Blyth, C., Foo, H., Patterson, J., Taylor, J., McPhie, K., Ratnamohan, V., Iredell, J., Dwyer, D. (2010), Comparison of a Rapid Antigen Test with Nucleic Acid Testing During Co-circulation of Pandemic Influenza A/H1N1 2009 and Seasonal Influenza A/H3N2. Journal of Clinical Microbiology. 48(1), 290-291. [Abstract]

2009

• Blyth, C., Iredell, J., Dwyer, D. (2009), Rapid-Test Sensitivity for Novel Swine-Origin Influenza A (H1N1) Virus in Humans. The New England journal of medicine. 361(25), 2493. [Abstract]
• Webb, S., Pettilä, V., Seppelt, I., Bellomo, R., Bailey, M., Cooper, D., Cretikos, M., Davies, A., Finfer, S., Harrigan, P., Hart, G., Howe, B., Iredell, J., McArthur, C., Mitchell, I., Morrison, S., Nichol, A., Paterson, D., Peake, S., Richards, B., Stephens, D., Turner, A., Yung, M. (2009), Critical care services and 2009 H1N1 influenza in Australia and New Zealand. New England Journal of Medicine. 361(20), 1925-1934. [Abstract]
• Chatterjee, I., Dulhunty, J., Iredell, J., Gallagher, J., Sud, A., Woods, M., Lipman, J. (2009), Predictors and outcome associated with an Enterococcus positive isolate during intensive care unit admission. Anaesthesia and Intensive Care. 37(6), 976-982. [Abstract]
• Partridge, S., Tsafnat, G., Coiera, E., Iredell, J. (2009), Gene cassettes and cassette arrays in mobile resistance integrons. FEMS microbiology reviews. 33(4), 757-784. [Abstract]
• van Hal, S., Wiklendt, A., Espedido, B., Ginn, A., Iredell, J. (2009), Immediate appearance of plasmid-mediated resistance to multiple antibiotics upon antibiotic selection: an argument for systematic resistance epidemiology. Journal of Clinical Microbiology. 47(7), 2325-2327. [Abstract]
• Zong, Z., Partridge, S., Iredell, J. (2009), A blaVEB-1 variant, blaVEB-6, associated with repeated elements in a complex genetic structure. Antimicrobial agents and chemotherapy. 53(4), 1693-1697. [Abstract]
• Bouchillon, S., Iredell, J., Barkham, T., Lee, K., Dowzicky, M. (2009), Comparative in vitro activity of tigecycline and other antimicrobials against Gram-negative and Gram-positive organisms collected from the Asia-Pacific Rim as part of the Tigecycline Evaluation and Surveillance Trial (TEST). International Journal of Antimicrobial Agents. 33(2), 130-136. [Abstract]
• Jiang, X., Espedido, B., Partridge, S., Thomas, L., Wang, F., Iredell, J. (2009), Paradoxical effect of Klebsiella pneumoniae OmpK36 porin deficiency. Pathology. 41(4), 388-392. [Abstract]
• Tsafnat, G., Coiera, E., Partridge, S., Schaeffer, J., Iredell, J. (2009), Context-driven discovery of gene cassettes in mobile integrons using a computational grammar. BMC bioinformatics. 10, 281. [Abstract]

2008

• Chapman, S., Iredell, J. (2008), Gram-negative sepsis in the intensive care unit: avoiding therapeutic failure. Current opinion in infectious diseases. 21(6), 604-609. [Abstract]
• Thomas, L., van Hal, S., O' Sullivan, M., Kyme, P., Iredell, J. (2008), Failure of the BD GeneOhm(R) StaphS/R assay for Australian MRSA strains: duplex assays remain the 'gold standard' in settings of unknown SCCmec epidemiology. Journal of clinical microbiology. 46(12), 4116-7. [Abstract]
• Xu, X., Kong, F., Cheng, X., Yan, B., Du, X., Gai, J., Ai, H., Shi, L., Iredell, J. (2008), Integron gene cassettes in Acinetobacter spp. strains from South China. International journal of antimicrobial agents. 32(5), 441-445. [Abstract]
• Zong, Z., Partridge, S., Thomas, L., Iredell, J. (2008), Dominance of blaCTX-M within an Australian ESBL gene pool. Antimicrobial agents and chemotherapy. 52(11), 4198-202. [Abstract]
• Lau, A., Sorrell, T., Chen, S., Stanley, K., Iredell, J., Halliday, C. (2008), Multiplex-Tandem PCR: A Novel Platform for the Rapid Detection and Identification of Fungal Pathogens from Blood Culture Specimens. Journal of clinical microbiology. 46(9), 3021-7. [Abstract]
• Espedido, B., Partridge, S., Iredell, J. (2008), blaIMP-4 in different genetic contexts in Enterobacteriaceae from Australia. Antimicrobial agents and chemotherapy. 52(8), 2984-7. [Abstract]
• Treerat, P., Widmer, F., Middleton, P., Iredell, J., George, A. (2008), In vitro interactions of tobramycin with various nonantibiotics against Pseudomonas aeruginosa and Burkholderia cenocepacia. FEMS microbiology letters. 285(12), 40-50. [Abstract]
• Syrmis, M., Bell, S., Bye, P., Coulter, C., Harbour, C., Iredell, J., Kidd, T., O'Carroll, M., Rose, B., Wainwright, C., Sloots, T., Nissen, M. (2008), High prevalence of a class 1 integron-associated aadB gene cassette in Pseudomonas aeruginosa isolates from an Australian cystic fibrosis patient population. Pathology. , 524-525. [Abstract]
• Zong, Z., Partridge, S., Iredell, J. (2008), RmtC 16S rRNA methyltransferase in Australia. Antimicrobial agents and chemotherapy. 52, 794-5. [Abstract]
• Zong, Z., Lü, X., Valenzuela, J., Partridge, S., Iredell, J. (2008), An outbreak of carbapenem-resistant Acinetobacter baumannii producing OXA-23 carbapenemase in western China. International journal of antimicrobial agents. 31(1), 50-54. [Abstract]

2007

• Iredell, J. (2007), Optimizing antipseudomonal therapy in critical care. Seminars in respiratory and critical care medicine. 28(6), 656-661. [Abstract]
• Sintchenko, V., Iredell, J., Gilbert, G. (2007), Pathogen profiling for disease management and surveillance. Nature Reviews. Microbiology. 5(6), 464-470. [Abstract]
• Espedido, B., Thomas, L., Iredell, J. (2007), Metallo-beta-lactamase or extended-spectrum beta-lactamase: a wolf in sheep's clothing. Journal of clinical microbiology. 45(6), 2034-2036. [Abstract]
• Iredell, J., Thomas, L., Power, D., Mendes, E. (2007), Tigecycline resistance in Australian antibiotic-resistant Gram-negative bacteria. The Journal of antimicrobial chemotherapy. , 816-818. [Abstract]
• Playford, E., Craig, J., Iredell, J. (2007), Carbapenem-resistant Acinetobacter baumannii in intensive care unit patients: risk factors for acquisition, infection and their consequences. The Journal of hospital infection. 65(3), 204-211. [Abstract]
• Chatterjee, I., Iredell, J., Woods, M., Lipman, J. (2007), The implications of enterococci for the intensive care unit. Critical care and resuscitation : journal of the Australasian Academy of Critical Care Medicine. 9(1), 69-75. [Abstract]
• Valenzuela, J., Thomas, L., Partridge, S., van der Reijden, T., Dijkshoorn, L., Iredell, J. (2007), Horizontal gene transfer within a polyclonal outbreak of carbapenem-resistant Acinetobacter baumannii. Journal of clinical microbiology. 45, 453-60. [Abstract]
• Thomas, L., Gidding, H., Ginn, A., Olma, T., Iredell, J. (2007), Development of a real-time Staphylococcus aureus and MRSA (SAM-) PCR for routine blood culture. Journal of microbiological methods. 68(0), 296-302. [Abstract]