2011

• Gaffé, J., McKenzie, C., Maharjan, R., Coursange, E., Ferenci, T., Schneider, D. (2011), Insertion sequence-driven evolution of Escherichia coli in chemostats. Journal of Molecular Evolution. 72(4), 398-412. [Abstract]
• Ferenci, T., Galbiati, H., Betteridge, T., Phan, K., Spira, B. (2011), The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli. BMC Microbiology. 11, 62. [Abstract]
• Spira, B., de Almeida Toledo, R., Maharjan, R., Ferenci, T. (2011), The uncertain consequences of transferring bacterial strains between laboratories - rpoS instability as an example. BMC Microbiology. 11, 248. [Abstract]

2010

• Maharjan, R., Zhou, Z., Ren, Y., Li, Y., Gaffé, J., Schneider, D., McKenzie, C., Reeves, P., Ferenci, T., Wang, L. (2010), Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli. Journal of bacteriology. 192(17), 4517-21. [Abstract]
• Gudelj, I., Weitz, J., Ferenci, T., Horner-Devine, M., Marx, C., Meyer, J., Forde, S. (2010), An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure. Ecology Letters. 13, 1073-1084. [Abstract]
• Levert, M., Zamfir, O., Clermont, O., Bouvet, O., Lespinats, S., Hipeaux, M., Branger, C., Picard, B., Saint-Ruf, C., Norel, F., Balliau, T., Zivy, M., Le Nagard, H., Cruvellier, S., Chane-Woon-Ming, B., Nilsson, S., Gudelj, I., Phan, K., Ferenci, T., Tenaillon, O., Denamur, E. (2010), Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections. PLoS Pathogens. 6(9), pii: e1001125. [Abstract]
• Wang, L., Spira, B., Zhou, Z., Feng, L., Maharjan, R., Li, X., Li, F., McKenzie, C., Reeves, P., Ferenci, T. (2010), Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation. Genome Biology and Evolution. , 478-487. [Abstract]

2009

• Ferenci, T., Zhou, Z., Betteridge, T., Ren, Y., Liu, Y., Feng, L., Reeves, P., Wang, L. (2009), Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. Journal of Bacteriology. 191(12), 4025-4029. [Abstract]

2008

• Spira, B., Hu, X., Ferenci, T. (2008), Strain variation in ppGpp concentration and RpoS levels in laboratory strains of Escherichia coli K-12. Microbiology. 154(Pt 9), 2887-2895. [Abstract]
• Ferenci, T. (2008), The spread of a beneficial mutation in experimental bacterial populations: the influence of the environment and genotype on the fixation of rpoS mutations. Heredity. 100(0), 446-52. [Abstract]
• Spira, B., Ferenci, T. (2008), Alkaline phosphatase as a reporter of sigma(S) levels and rpoS polymorphisms in different E. coli strains. Archives of microbiology. 189(1), 43-7. [Abstract]
• Ferenci, T. (2008), Bacterial physiology, regulation and mutational adaptation in a chemostat environment. Advances in microbial physiology. 53, 169-229. [Abstract]

2007

• Ferenci, T. (2007), Sensing nutrient levels in bacteria. Nature chemical biology. 3(10), 607-608. [Abstract]
• Ferenci, T., Spira, B. (2007), Variation in Stress Responses within a Bacterial Species and the Indirect Costs of Stress Resistance. Annals of the New York Academy of Sciences. 1113, 105-13. [Abstract]
• Maharjan, R., Seeto, S., Ferenci, T. (2007), Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population. Journal of bacteriology. 189(6), 2350-8. [Abstract]
• Wittmann, C., Sauer, U., Fostel, J., Oldiges, M., van der Werf, M., Hooks, M., Portais, J., Ferenci, T., Nielsen, J., Smedsgaard, J., Takors, R., Tomassini, A. (2007), Standard reporting requirements for biological samples in metabolomics experiments: microbial and in vitro biology experiments. METABOLOMICS. 3(3), 189-194. [Abstract]

2006

• Maharjan, R., Seeto, S., Notley-McRobb, L., Ferenci, T. (2006), Clonal Adaptive Radiation in a Constant Environment. Science (New York, N.Y.). 313, 514-7. [Abstract]
• Ferenci, T. (2006), A cultural divide on the use of chemostats. Microbiology (Reading, England). 152(Pt 5), 1247-8. [Abstract]
• King, T., Seeto, S., Ferenci, T. (2006), Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations. Genetics. 172(4), 2071-9. [Abstract]