DNA Repair Group

Lab head: Dr Chris Jolly
Location: Centenary Institute


My group studies antibody mutation in activated B cells, which is initiated by the DNA editing enzyme "AID". B cells mutate their antibody genes at extremely high rates during infections, to rapidly optimise the ability of the antibodies they make to neutralise the infecting pathogen. "Off-target" many adult B cell cancers, so we seek to understand why AID-induced DNA damage leads to mutation, when similar DNA damage is generally repaired faithfully.

Website: www.centenary.org.au
Lab members: Team Members (in addition to Dr Jolly): 1 Postdoctoral Fellow, 1 Research Assistant, 1 PhD Student, 1 Honours Student
Funding: NHMRC, Cancer Council NSW
Research approach equipment: We use retroviral-mediated transgenesis of mouse haematopoietic cells to modify DNA repair pathways in B cells, in order to determine how inactivating or cell cycle restricting DNA repair pathways influences gene mutation in activated B cells.


Chan, T.D., K. Wood, J.R. Hermes, D. Butt, C.J. Jolly, A. Basten, and R. Brink. 2012. Elimination of germinal center-derived self-reactive B cells is governed by the location and level of self-antigen. Immunity 37:893-904. http://www.ncbi.nlm.nih.gov/pubmed/23142780

Sharbeen, G., C.W. Yee, A.L. Smith, and C.J. Jolly. 2012. Ectopic restriction of DNA repair reveals that UNG2 excises AID-induced uracils predominantly or exclusively during G1 phase. J Exp Med 209:965-974. http://www.ncbi.nlm.nih.gov/pubmed/22529268

Sharbeen, G., A.J. Cook, K.K. Lau, J. Raftery, C.W. Yee, and C.J. Jolly. 2010. Incorporation of dUTP does not mediate mutation of A:T base pairs in Ig genes in vivo. Nucleic Acids Res. 38:8120-8130. http://www.ncbi.nlm.nih.gov/pubmed/20705648

Jolly, C.J., A.J. Cook, and J.P. Manis. 2008. Fixing DNA breaks during class switch recombination. J Exp Med. 205:509-513. http://www.ncbi.nlm.nih.gov/pubmed/18332183

Cook, A.J., J.M. Raftery, K.K. Lau, A. Jessup, R.S. Harris, S. Takeda, and C.J. Jolly. 2007. DNA-Dependent Protein Kinase Inhibits AID-Induced Antibody Gene Conversion. PLoS Biol. 5:792-799. http://www.ncbi.nlm.nih.gov/pubmed/17355182

Jolly, C., A.J. Cook, J. Raferty, and M.E. Jones. 2007. Measuring bidirectional mutation. J. Theor. Biol. 246:269-277. http://www.ncbi.nlm.nih.gov/pubmed/17292922

Cook, A.J.L., L. Oganesian, P. Harumal, A. Basten, R. Brink, and C.J. Jolly. 2003. Reduced Switching in SCID B Cells Is Associated with Altered Somatic Mutation of Recombined S Regions. J Immunol 171:6556-6564. http://www.ncbi.nlm.nih.gov/pubmed/14662857

Jolly, C.J., and M.S. Neuberger. 2001. Somatic hypermutation of immunoglobulin kappa transgenes: association of mutability with demethylation. Immunol. Cell Biol. 79:18-22. http://www.ncbi.nlm.nih.gov/pubmed/21100930

Williams, G.T., C.J. Jolly, J. Kohler, and M.S. Neuberger. 2000. The contribution of somatic hypermutation to the diversity of serum immunoglobulin: dramatic increase with age. Immunity 13:409-417. http://www.ncbi.nlm.nih.gov/pubmed/11021538

Jolly, C.J., S.D. Wagner, C. Rada, N. Klix, C. Milstein, and M.S. Neuberger. 1996. The targeting of somatic hypermutation. Semin. Immunol. 8:159-168. http://www.ncbi.nlm.nih.gov/pubmed/8738915

Klix, N., C.J. Jolly, S.L. Davies, M. Bruggemann, G.T. Williams, and M.S. Neuberger. 1998. Multiple sequences from downstream of the J kappa cluster can combine to recruit somatic hypermutation to a heterologous, upstream mutation domain. Eur. J. Immunol. 28:317-326. http://www.ncbi.nlm.nih.gov/pubmed/9485211

Neuberger, M.S., M.R. Ehrenstein, N. Klix, C.J. Jolly, J. Yelamos, C. Rada, and C. Milstein. 1998. Monitoring and interpreting the intrinsic features of somatic hypermutation. Immunol. Rev. 162:107-116. http://www.ncbi.nlm.nih.gov/pubmed/9602357

Mapping translocations in pre-cancerous human B cells

Primary supervisor: Christopher Jolly

During responses to infection or immunisation, antibody-producing “B” cells mutate their antibody genes at extreme rates. Rare mutations that improve antibodies are selected by competition between B cells favouring those which make the better antibodies: Darwinian evolution on extreme “fast-forward”. We aim to understand this process because it is essential for normal immunity and effective vaccination, but also because when it goes wrong, it induces translocations that cause aggressive human cancers such as Burkitt’s lymphoma and Multiple myeloma. 

Both physiological and oncogenic gene mutation in B cells is induced by the DNA editing enzyme "AID". Recently, the translocations that AID induces have been mapped genome-wide in mouse B cells using "translocation-capture" deep sequencing (see http://www.ncbi.nlm.nih.gov/pubmed/21962510). Translocation-capture deep sequencing requires a reagent that will efficiently cleave a genome at a single site very efficiently, without cleaving the genome elsewhere. This project will develop such a reagent for use in healthy human B cells, setting up the potential to map human AID-induced translocations genome-wide.

The project will involve the construction of novel retroviral vectors, transduction of human B cell lines with these vectors, FACS analysis and cell sorting, and high-throughput DNA sequencing.

Discipline: Infectious diseases and Immunology
Keywords: Cancer, Cell & Molecular Biology, B cells