The Molecular Ecology, Evolution, and Phylogenetics lab runs regular workshops, mainly on phylogenetics. Participation in these workshops is free, but registration is essential. Details of future workshops will be posted here. In 2015, workshops on phylogenetics will be held at the University of Sydney (July), Macquarie University (September), University of Melbourne (September), and Australian National University (November).
Introduction to phylogenetic analysis
Thursday 29 January to Friday 30 January, 2015
Simon Ho, Sebastián Duchêne, and David Duchêne
Research School of Biology, Australian National University
The MEEP laboratory held a free two-day workshop on phylogenetic analysis at the Australian National University. The workshop was supported by the Australian Bioinformatics Network and COMBINE.
This workshop provided an introduction to phylogenetic analysis, including practical exercises based on the software MEGA and BEAST. The content was designed to be suitable for graduate students and postdoctoral researchers at all levels of experience.
The first day covered interpreting phylogenetic trees, sequence alignment, evolutionary models, and phylogenetic methods. The second day focused on Bayesian phylogenetic analysis and included molecular clocks, estimating timescales, coalescent theory, and demographic reconstruction.
Workshop materials are available below.
Lecture 1. Introduction to phylogenetic analysis
Lecture 2. Evolutionary models
Lecture 3. Phylogenetic methods
Lecture 4. Bayesian phylogenetic analysis
Lecture 5. Rates and timescales
Lecture 6. Analysing populations
Practical 1. Instructions, Data File
Practical 2. Instructions, Data File
Practical 3. Instructions, Data File 1, Data File 2
|Introduction to Phylogenetic Analysis||Jul 2015||University of Sydney||18|
|Introduction to Phylogenetic Analysis||Jan 2015||Australian National University||30|
|Introduction to Phylogenetic Analysis||Jul 2014||University of Sydney||42|
|Statistical computing and data analysis using R||Jul 2014||University of Sydney||26|
|Introduction to Phylogenetic Analysis||Jul 2014||University of Sydney||10|
|Statistical computing and data analysis using R||Nov 2013||University of Sydney||28|
|Introduction to Phylogenetic Analysis||Jul 2013||University of Sydney||51|
|Introduction to Phylogenetic Analysis||Jul 2013||University of New South Wales||30|
|Introduction to Phylogenetic Analysis||Jul 2012||University of Sydney||58|
|PhyloWorkshop||May 2012||Australian National University||43|
|Bayesian Phylogenetic Analysis Using BEAST||Aug 2011||National Herbarium of NSW||16|
|Bayesian Phylogenetic Analysis Using BEAST||Jul 2011||University of Sydney||30|
|Bayesian Phylogenetic Analysis Using BEAST||Dec 2010||University of Gothenburg||32|
|Bayesian Phylogenetic Analysis Using BEAST||Oct 2010||University of Sydney||10|
|Bayesian Phylogenetic Analysis Using BEAST||Jul 2010||University of Sydney||55|
|Bayesian Phylogenetic Analysis Using BEAST||Mar 2010||Australian National University||30|
|Bayesian Phylogenetic Analysis Using BEAST||Aug 2008||Australian National University||50|