UniServe Science

UniServe Science Logo USyd crest

Molecular Dynamics



Product Name: Molecular Dynamics
Level: Third Year Tertiary
Platform: Macintosh®
Supplied Information: Molecular Dynamics - Potential energy surfaces and reaction dynamics are standard topics in undergraduate physical chemistry courses. Examining chemical reactions in terms of atomic-level collisions is important in general chemistry courses as well. From an educational standpoint, a major consideration in studying atomic-level collisions is the visualization process that is required. It is common to find in chemistry textbooks static, cartoon-like drawings of colliding atoms and molcules. A much more effective representation of atomic-level collisions involves a dynamic animation of events.
Possible Use: This product is suitable for Third Year Tertiary courses for use by students working under instruction.
Price: $70 US
Developer/s: H.D.Kutz, J.H.Copeland & G.T.Mathai, University of Tennessee
Review: JCE: Software, volume IV, series C, number 2 (1992) consists of three programs: Acid-Base Package; Reaction Dynamics; and Molecular Dynamics. Molecular Dynamics allows the student to play with the F+H2 reaction (linear configuration only). It is possible to explore the potential surface by viewing it as a 3-dimension surface, or contour plot - in bond-length or mass-weighted coordinates. The program is excellent in this regard. The manual states it is possible to run trajectory simulations (an option in this program) on a Mac Plus, but when tested on a Mac LC III, simulations of the reaction ran extremely slowly. I would recommend the much faster Reaction Dynamics program for this purpose. This program is more of a self-contained CAI tutorial than the other two packages. There is a brief statement of learning objectives, but no self-assessment. Overall, I would recommend this package for use in 3rd and 4th year classes on reaction dynamics (kinetics). General summary: The three programs have excellent documentation, with references to the literature for further reading. The programs should be seen as tools, rather than self-contained packages. In my classes, I have written a detailed set of instructions for students to follow in order to meet specified learning objectives (students were not given copies of the manual), and I would recommend that other lecturers do likewise. Think of these packages as pieces of laboratory equipment - pretty much useless for the average student, until (s)he is told what to do with it! I would recommend buying this package for use in senior Physical Chemistry classes. I have used the Molecular Dynamics program for students to see the 3-dimensional shape of potential surfaces, their features and the relationship between a surface and its contour diagram. The Reaction Dynamics program is then used to run trajectories for the same (and other reactions). A note of caution is that the locations of the reactant channel and product channel on the horizontal and vertical axes in the two programs are interchanged. The Acid-Base Package should be viewed as a freebie.
Dr Kieran F Lim
Supplier: JCE Software, University of Wisconsin-Madison, Madison, WI 53 706-1396, USA
JCESOFT@MACC.WISC.EDU
http://jchemed.chem.wisc.edu/JCESoft/
Date Record Last Modified: 23/6/97


Use your browser's back button to return


logo
UniServe Science
logo
University of Sydney

Page Maintained By: PhySciCH@mail.usyd.edu.au