Development of genomic resources and unravelling the genetic architecture of complex phenotypic traits in the black tiger prawn (University of Sydney & James Cook University)

Unfortunately, this opportunity is currently unavailable. Please check back at a later date.

Summary

Dense SNP-based genomic maps are valuable in associating genetic loci (QTL, GWAS) with complex phenotypic traits and in understanding genome structures. They can also provide a framework for integrating various genomic data including a draft genome sequence assembly for the black tiger prawn (Penaeus monodon). In order to construct a comprehensive genome mapping resource as part of this project, a genetic linkage (LA) map and a locus ordering map based on pairwise linkage disequilbria (LODE) will be developed. These maps will then be used to create a high-density map by integrating all mapping data together and imputing all loci to their most likely position. This high-density map will then be applied to examine the architecture of commercial production traits using GWAS and QTL analyses to associate genome structures with variable phenotypic traits.

Supervisor(s)

Associate Professor Peter Campbell Thomson, Dr Mehar Singh Khatkar

Research Location

Sydney School of Veterinary Science

Program Type

PHD

Synopsis

The desired candidate will preferably have a background in molecular and quantitative genetics, along with basic skills in computational analyses.

Additional Information

There are several projects available through this program (as advertised in Research Supervisor Connect). A candidate will need to apply and secure APA/UPA, IPRS, or other equivalent scholarship. For more information on what the ARC Research Hub for Advanced Prawn Breeding will achieve and partners please visit https://research.jcu.edu.au/itrh-apbThe University of Sydney 

Contacts:
A/Prof Peter Thomson (peter.thomson@sydney.edu.au)
Dr Mehar Khatkar (mehar.khatkar@sydney.edu.au)

Want to find out more?

Contact us to find out what’s involved in applying for a PhD. Domestic students and International students

Browse for other opportunities within the Sydney School of Veterinary Science .

Keywords

phenotypic traits, black tiger prawn, prawn

Opportunity ID

The opportunity ID for this research opportunity is: 1992

Other opportunities with Associate Professor Peter Campbell Thomson

Other opportunities with Dr Mehar Singh Khatkar