Dr Penghao Wang

F07 - Carslaw Building
The University of Sydney

Selected publications

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Book Chapters

  • Wang, P., Zomaya, A. (2014). Cleansing of Mass Spectrometry Data for Protein Identification and Quantification. In Mourad Elloumi, Albert Y. Zomaya (Eds.), Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data, (pp. 59-76). New Jersey: John Wiley & Sons. [More Information]

Journals

  • Strbenac, D., Zhong, L., Raftery, M., Wang, P., Wilson, S., Armstrong, N., Yang, J. (2017). Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods. Journal of Proteome Research, 16(7), 2359-2369. [More Information]
  • Mactier, S., Kaufman (nee Alexander), K., Wang, P., Crossett, B., Pupo, G., Kohnke, P., Thompson, J., Scolyer, R., Yang, J., Mann, G., Christopherson, R. (2014). Protein signatures correspond to survival outcomes of AJCC stage III melanoma patients. Pigment Cell & Melanoma Research, 27(6), 1106-1116. [More Information]
  • Chung, S., Shen, W., Jayawardana, K., Wang, P., Yang, J., Shackel, N., Gillies, M. (2013). Differential gene expression profiling after conditional müller-cell ablation in a novel transgenic model. Investigative Ophthalmology and Visual Science, 54(3), 2142-2152. [More Information]
  • Mactier, S., Kaufman (nee Alexander), K., Wang, P., Crossett, B., Yang, E., Scolyer, R., Yang, J., Mann, G., Christopherson, R. (2013). Identification of markers prognostic of survival in lymph node metastases from stage III melanoma patients. European Journal of Cancer, 49(Suppl 2), S874-S874.
  • Yang, P., Ma, J., Wang, P., Zhu, Y., Zhou, B., Yang, J. (2012). Improving X!Tandem on peptide identification from mass spectrometry by self-boosted percolator. IEEE - ACM Transactions on Computational Biology and Bioinformatics, 9(5), 1273-1280. [More Information]
  • Wang, P., Yang, P., Yang, J. (2012). OCAP: an open comprehensive analysis pipeline for iTRAQ. Bioinformatics, 28(10), 1404-1405. [More Information]
  • Wang, P., Yang, P., Arthur, J., Yang, J. (2010). A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data. Bioinformatics, 26(18), 2242-2249. [More Information]
  • Wang, P., Zhou, B., Wang, C., Zomaya, A. (2010). A Novel Integrative Phylogenetic Analysis System. International Journal of Computational Biology and Drug Design, 3(1), 1-14. [More Information]

Conferences

  • Wang, P., Wilson, S. (2013). A New Hybrid Probability-Based Method for Identifying Proteins and Protein Modifications. 2013 IEEE Symposium Series on Computational Intelligence (IEEE SSCI 2013), USA: Institute of Electrical and Electronics Engineers (IEEE). [More Information]
  • Wang, P., Yang, J., Raftery, M., Zhong, L., Wilson, S. (2013). Latin Square Dataset for Evaluating the Accuracy of Mass Spectrometry-based Protein Identification and Quantification. 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM2013), Piscataway, United States: Institute of Electrical and Electronics Engineers (IEEE). [More Information]
  • Wang, P., Zhou, B., Wang, C., Pang, B., Zomaya, A. (2008). A Multi-criteria Phylogenetic Reconstruction Method. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.
  • Wang, P., Zhou, B., Wang, C., Zhao, Z., Zomaya, A. (2008). An Integrative Approach to Phylogenetic Inference. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.
  • Wang, P., Zhou, B., Tarawneh, M., Chu, D., Wang, C., Zomaya, A., Brent, R. (2007). A global maximum likelihood super-quartet phylogeny method. The 5th Asia-Pacific Bioinformatics Conference (APBC2007), London, UK: Imperial College Press.
  • Tarawneh, M., Zhou, B., Wang, P., Zomaya, A. (2007). Investigation of Relationships among Excavate Taxa Using a New Quartet-based Pyhlogenetic Analysis Method. 21st IEEE International Conference on Advanced Information Networking and Applications (AINA 2007), USA: Institute of Electrical and Electronics Engineers (IEEE).
  • Zhou, B., Tarawneh, M., Wang, P., Chu, D., Wang, C., Zomaya, A., Brent, R. (2006). Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree. Sixth IEEE Symposium on BionInformatics and BioEngineering (BIBE 2006), USA: Institute of Electrical and Electronics Engineers (IEEE).
  • Zhou, B., Tarawneh, M., Chu, D., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). On a New Quartet-Based Phylogeny Reconstruction Algorithm. 2006 International Conference on Bioinformatics and Computational Biology (BIOCOMP'06), USA: CSREA Press.
  • Zhou, B., Chu, D., Tarawneh, M., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). Parallel Implementation of a Quartet-Based Algorithm for Phylogenetic Analysis. 5th IEEE International Workshop on High Performance Computational Biology HiCOMB 2006 in conjunction with 20th International Parallel and Distributed Processing Symposium, USA: Institute of Electrical and Electronics Engineers (IEEE).
  • Chung, V., Wang, P., Chen, X., Bae, C., Otoom, A., Tran, T. (2005). A Performance Comparison of High Capacity Digital Watermarking Systems. 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems, Germany: Springer.
  • Bae, C., Chung, V., Chen, X., Wang, P. (2005). Error Detection and Copyrights Protection Scheme for MPEG-2 Based on Channel Coded Watermark Signal. Third International Conference on Information Technology and Applications (ICITA'05), Los Alamitos: Institute of Electrical and Electronics Engineers (IEEE).
  • Chung, V., Sun, Y., Wang, P., Chen, X., Bae, C. (2005). Implementation of Image Steganographic System Using Wavelet Zerotree. 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems, Germany: Springer.
  • Chung, V., Sun, Y., Wang, P., Ming, X. (2004). A New E-Shopping System Using High Performance Custom Computers. 28th Annual International Computer Software and Applications Conference (COMPSAC 2004), Los Alamitos, CA, USA: Institute of Electrical and Electronics Engineers (IEEE).

2017

  • Strbenac, D., Zhong, L., Raftery, M., Wang, P., Wilson, S., Armstrong, N., Yang, J. (2017). Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods. Journal of Proteome Research, 16(7), 2359-2369. [More Information]

2014

  • Wang, P., Zomaya, A. (2014). Cleansing of Mass Spectrometry Data for Protein Identification and Quantification. In Mourad Elloumi, Albert Y. Zomaya (Eds.), Biological Knowledge Discovery Handbook: Preprocessing, Mining and Postprocessing of Biological Data, (pp. 59-76). New Jersey: John Wiley & Sons. [More Information]
  • Mactier, S., Kaufman (nee Alexander), K., Wang, P., Crossett, B., Pupo, G., Kohnke, P., Thompson, J., Scolyer, R., Yang, J., Mann, G., Christopherson, R. (2014). Protein signatures correspond to survival outcomes of AJCC stage III melanoma patients. Pigment Cell & Melanoma Research, 27(6), 1106-1116. [More Information]

2013

  • Wang, P., Wilson, S. (2013). A New Hybrid Probability-Based Method for Identifying Proteins and Protein Modifications. 2013 IEEE Symposium Series on Computational Intelligence (IEEE SSCI 2013), USA: Institute of Electrical and Electronics Engineers (IEEE). [More Information]
  • Chung, S., Shen, W., Jayawardana, K., Wang, P., Yang, J., Shackel, N., Gillies, M. (2013). Differential gene expression profiling after conditional müller-cell ablation in a novel transgenic model. Investigative Ophthalmology and Visual Science, 54(3), 2142-2152. [More Information]
  • Mactier, S., Kaufman (nee Alexander), K., Wang, P., Crossett, B., Yang, E., Scolyer, R., Yang, J., Mann, G., Christopherson, R. (2013). Identification of markers prognostic of survival in lymph node metastases from stage III melanoma patients. European Journal of Cancer, 49(Suppl 2), S874-S874.
  • Wang, P., Yang, J., Raftery, M., Zhong, L., Wilson, S. (2013). Latin Square Dataset for Evaluating the Accuracy of Mass Spectrometry-based Protein Identification and Quantification. 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM2013), Piscataway, United States: Institute of Electrical and Electronics Engineers (IEEE). [More Information]

2012

  • Yang, P., Ma, J., Wang, P., Zhu, Y., Zhou, B., Yang, J. (2012). Improving X!Tandem on peptide identification from mass spectrometry by self-boosted percolator. IEEE - ACM Transactions on Computational Biology and Bioinformatics, 9(5), 1273-1280. [More Information]
  • Wang, P., Yang, P., Yang, J. (2012). OCAP: an open comprehensive analysis pipeline for iTRAQ. Bioinformatics, 28(10), 1404-1405. [More Information]

2010

  • Wang, P., Yang, P., Arthur, J., Yang, J. (2010). A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data. Bioinformatics, 26(18), 2242-2249. [More Information]
  • Wang, P., Zhou, B., Wang, C., Zomaya, A. (2010). A Novel Integrative Phylogenetic Analysis System. International Journal of Computational Biology and Drug Design, 3(1), 1-14. [More Information]

2008

  • Wang, P., Zhou, B., Wang, C., Pang, B., Zomaya, A. (2008). A Multi-criteria Phylogenetic Reconstruction Method. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.
  • Wang, P., Zhou, B., Wang, C., Zhao, Z., Zomaya, A. (2008). An Integrative Approach to Phylogenetic Inference. International Conference on Bioinformatics and Computational Biology (BIOCOMP 2008), USA: CSREA Press.

2007

  • Wang, P., Zhou, B., Tarawneh, M., Chu, D., Wang, C., Zomaya, A., Brent, R. (2007). A global maximum likelihood super-quartet phylogeny method. The 5th Asia-Pacific Bioinformatics Conference (APBC2007), London, UK: Imperial College Press.
  • Tarawneh, M., Zhou, B., Wang, P., Zomaya, A. (2007). Investigation of Relationships among Excavate Taxa Using a New Quartet-based Pyhlogenetic Analysis Method. 21st IEEE International Conference on Advanced Information Networking and Applications (AINA 2007), USA: Institute of Electrical and Electronics Engineers (IEEE).

2006

  • Zhou, B., Tarawneh, M., Wang, P., Chu, D., Wang, C., Zomaya, A., Brent, R. (2006). Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree. Sixth IEEE Symposium on BionInformatics and BioEngineering (BIBE 2006), USA: Institute of Electrical and Electronics Engineers (IEEE).
  • Zhou, B., Tarawneh, M., Chu, D., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). On a New Quartet-Based Phylogeny Reconstruction Algorithm. 2006 International Conference on Bioinformatics and Computational Biology (BIOCOMP'06), USA: CSREA Press.
  • Zhou, B., Chu, D., Tarawneh, M., Wang, P., Wang, C., Zomaya, A., Brent, R. (2006). Parallel Implementation of a Quartet-Based Algorithm for Phylogenetic Analysis. 5th IEEE International Workshop on High Performance Computational Biology HiCOMB 2006 in conjunction with 20th International Parallel and Distributed Processing Symposium, USA: Institute of Electrical and Electronics Engineers (IEEE).

2005

  • Chung, V., Wang, P., Chen, X., Bae, C., Otoom, A., Tran, T. (2005). A Performance Comparison of High Capacity Digital Watermarking Systems. 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems, Germany: Springer.
  • Bae, C., Chung, V., Chen, X., Wang, P. (2005). Error Detection and Copyrights Protection Scheme for MPEG-2 Based on Channel Coded Watermark Signal. Third International Conference on Information Technology and Applications (ICITA'05), Los Alamitos: Institute of Electrical and Electronics Engineers (IEEE).
  • Chung, V., Sun, Y., Wang, P., Chen, X., Bae, C. (2005). Implementation of Image Steganographic System Using Wavelet Zerotree. 9th International Conference on Knowledge-Based Intelligent Information and Engineering Systems, Germany: Springer.

2004

  • Chung, V., Sun, Y., Wang, P., Ming, X. (2004). A New E-Shopping System Using High Performance Custom Computers. 28th Annual International Computer Software and Applications Conference (COMPSAC 2004), Los Alamitos, CA, USA: Institute of Electrical and Electronics Engineers (IEEE).

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