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Unit outline_

CHEM3910: Biomolecules: Properties and Reactions Adv

Semester 1, 2020 [Normal day] - Camperdown/Darlington, Sydney

DNA, proteins and carbohydrates represent three classes of essential biomolecules present in all biological systems. This unit will cover the structure, reactivity and properties of biomolecules and the building blocks from which these molecules are assembled. Interactions between biomolecules and metal ions, small molecules and other biomolecules will be covered and the chemical tools for studying biomolecules highlighted. The design and synthesis of small molecules which mimic the functions of biomolecules will also be illustrated. CHEM3910 students attend the same lectures as CHEM3110 students but attend an additional advanced seminar series comprising one lecture a week for 12 weeks.

Unit details and rules

Academic unit Chemistry Academic Operations
Credit points 6
Prerequisites
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[(65 or greater in (CHEM2401 or CHEM2911 or CHEM2915)) AND (65 or greater in (CHEM2402 or CHEM2912 or CHEM2916))] OR (65 or greater in (CHEM2521 or CHEM2921 or CHEM2991))
Corequisites
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None
Prohibitions
? 
CHEM3110
Assumed knowledge
? 

None

Available to study abroad and exchange students

Yes

Teaching staff

Coordinator Girish Lakhwani, girish.lakhwani@sydney.edu.au
Lecturer(s) Ronald Clarke, ronald.clarke@sydney.edu.au
Type Description Weight Due Length
Final exam Examination
Written examination made up of short answer questions.
48% Formal exam period 2 hours
Outcomes assessed: LO1 LO8 LO2
Assignment hurdle task Investigative lab report and presentation
Lab report submitted on Canvas and Presentation done online.
33% Multiple weeks See canvas for details
Outcomes assessed: LO3 LO4 LO5 LO6 LO7 LO8
Assignment Adv Assignment(s)
Advanced assignment(s). See canvas for details.
7% Multiple weeks See canvas for details
Outcomes assessed: LO4 LO7 LO8
Assignment Written Assignment(s)
Written Assignment(s). See canvas for details.
12% Week 08 See canvas for details
Outcomes assessed: LO1 LO8 LO7 LO4 LO2
hurdle task = hurdle task ?

Assessment summary

  • Examination: The theory course represents 67% of the unit mark. The theory component of the course must be passed for the unit for the unit to be passed. The final examination is worth 72% of the theory mark. It covers the whole of the lecture course and is made up of short answer questions. Full exam papers are available on the canvas site for this unit. Theory component also includes written assignment and additional advance assignments.
  • Laboratory: The laboratory course represents 33% of the unit mark for students enrolled in CHEM3910. It is assessed through a variety of in-class and online activities. The laboratory course must be passed for the unit to be passed. In addition, you must attend 90% of allocated experimental sessions to pass the laboratory course.

Assessment criteria

The University awards common result grades, set out in the Coursework Policy 2014 (Schedule 1).

As a general guide, a High distinction indicates work of an exceptional standard, a Distinction a very high standard, a credit a good standard, and a pass an acceptable standard.

Result name

Mark range

Description

High distinction

85 - 100

At HD level, a student demonstrates a flair for the subject as well as a detailed and comprehensive understanding of the unit material. A ‘High Distinction’ reflects exceptional achievement and is awarded to a student who demonstrates the ability to apply their subject knowledge and understanding to produce original solutions for novel or highly complex problems and/or comprehensive critical discussions of theoretical concepts.

Distinction

75 - 84

At DI level, a student demonstrates an aptitude for the subject and a well-developed understanding of the unit material. A ‘Distinction’ reflects excellent achievement and is awarded to a student who demonstrates an ability to apply their subject knowledge and understanding of the subject to produce good solutions for challenging problems and/or a reasonably well-developed critical analysis of theoretical concepts.

Credit

65 - 74

At CR level, a student demonstrates a good command and knowledge of the unit material. A ‘Credit’ reflects solid achievement and is awarded to a student who has a broad general understanding of the unit material and can solve routine problems and/or identify and superficially discuss theoretical concepts.

Pass

50 - 64

At PS level, a student demonstrates proficiency in the unit material. A ‘Pass’ reflects satisfactory achievement and is awarded to a student who has threshold knowledge.

Fail

0 - 49

When you don’t meet the learning outcomes of the unit to a satisfactory standard.


.

For more information see guide to grades.

Late submission

In accordance with University policy, these penalties apply when written work is submitted after 11:59pm on the due date:

  • Deduction of 5% of the maximum mark for each calendar day after the due date.
  • After ten calendar days late, a mark of zero will be awarded.

This unit has an exception to the standard University policy or supplementary information has been provided by the unit coordinator. This information is displayed below:

Assessment tasks must be submitted by the due dates. Failing to submit at this time will incure mark deductions of 5% of the total mark available for 10 calendar days, after which a mark of zero is applied (for electronic submissions, days late include Saturdays, Sundays and public holidays). Due dates are the absolute latest time points by which such assessment tasks need to be submitted without being penalised.

Academic integrity

The Current Student website provides information on academic integrity and the resources available to all students. The University expects students and staff to act ethically and honestly and will treat all allegations of academic integrity breaches seriously.

We use similarity detection software to detect potential instances of plagiarism or other forms of academic integrity breach. If such matches indicate evidence of plagiarism or other forms of academic integrity breaches, your teacher is required to report your work for further investigation.

Use of generative artificial intelligence (AI) and automated writing tools

You may only use generative AI and automated writing tools in assessment tasks if you are permitted to by your unit coordinator. If you do use these tools, you must acknowledge this in your work, either in a footnote or an acknowledgement section. The assessment instructions or unit outline will give guidance of the types of tools that are permitted and how the tools should be used.

Your final submitted work must be your own, original work. You must acknowledge any use of generative AI tools that have been used in the assessment, and any material that forms part of your submission must be appropriately referenced. For guidance on how to acknowledge the use of AI, please refer to the AI in Education Canvas site.

The unapproved use of these tools or unacknowledged use will be considered a breach of the Academic Integrity Policy and penalties may apply.

Studiosity is permitted unless otherwise indicated by the unit coordinator. The use of this service must be acknowledged in your submission as detailed on the Learning Hub’s Canvas page.

Outside assessment tasks, generative AI tools may be used to support your learning. The AI in Education Canvas site contains a number of productive ways that students are using AI to improve their learning.

Simple extensions

If you encounter a problem submitting your work on time, you may be able to apply for an extension of five calendar days through a simple extension.  The application process will be different depending on the type of assessment and extensions cannot be granted for some assessment types like exams.

Special consideration

If exceptional circumstances mean you can’t complete an assessment, you need consideration for a longer period of time, or if you have essential commitments which impact your performance in an assessment, you may be eligible for special consideration or special arrangements.

Special consideration applications will not be affected by a simple extension application.

Using AI responsibly

Co-created with students, AI in Education includes lots of helpful examples of how students use generative AI tools to support their learning. It explains how generative AI works, the different tools available and how to use them responsibly and productively.

WK Topic Learning activity Learning outcomes
Multiple weeks Chemistry and properties of certain important classes of biological molecules including Amino Acids, Peptides, Proteins, and Carbohydrates (weeks 1-5) Lecture (10 hr)  
Chemistry of Nucleic Acids (weeks 6-10) Lecture (10 hr)  
Biospectroscopy to study biomolecular structure, intracellular biochemistry, protein-protein interactions, post-translational modifications and drug design (weeks 11-13) Lecture (6 hr)  
Two 4-hour practicals per week for half of semester Science laboratory (52 hr)  
Advanced: Contemporary topics in Nanoscience (weeks 2-7) Seminar (6 hr)  
Advanced: Contemporary topics in quantum chemistry (weeks 8-13) Seminar (6 hr)  

Study commitment

Typically, there is a minimum expectation of 1.5-2 hours of student effort per week per credit point for units of study offered over a full semester. For a 6 credit point unit, this equates to roughly 120-150 hours of student effort in total.

Learning outcomes are what students know, understand and are able to do on completion of a unit of study. They are aligned with the University's graduate qualities and are assessed as part of the curriculum.

At the completion of this unit, you should be able to:

  • LO1. understand in-depth the types of biomolecules prevalent in a living system, how they interact, and how those interactions can be monitored
  • LO2. explain the reactivity and structure of biomolecules and the building blocks from which they are assembled.
  • LO3. perform safe laboratory manipulations and to handle glassware
  • LO4. find and analyse information and judge its reliability and significance
  • LO5. communicate scientific information appropriately both orally and through written work
  • LO6. engage in team and group work for scientific investigations and for the process of learning
  • LO7. develop a sense of responsibility and independence as a learner and as a scientist
  • LO8. demonstrate basic skills in computing, numeracy and data handling.

Graduate qualities

The graduate qualities are the qualities and skills that all University of Sydney graduates must demonstrate on successful completion of an award course. As a future Sydney graduate, the set of qualities have been designed to equip you for the contemporary world.

GQ1 Depth of disciplinary expertise

Deep disciplinary expertise is the ability to integrate and rigorously apply knowledge, understanding and skills of a recognised discipline defined by scholarly activity, as well as familiarity with evolving practice of the discipline.

GQ2 Critical thinking and problem solving

Critical thinking and problem solving are the questioning of ideas, evidence and assumptions in order to propose and evaluate hypotheses or alternative arguments before formulating a conclusion or a solution to an identified problem.

GQ3 Oral and written communication

Effective communication, in both oral and written form, is the clear exchange of meaning in a manner that is appropriate to audience and context.

GQ4 Information and digital literacy

Information and digital literacy is the ability to locate, interpret, evaluate, manage, adapt, integrate, create and convey information using appropriate resources, tools and strategies.

GQ5 Inventiveness

Generating novel ideas and solutions.

GQ6 Cultural competence

Cultural Competence is the ability to actively, ethically, respectfully, and successfully engage across and between cultures. In the Australian context, this includes and celebrates Aboriginal and Torres Strait Islander cultures, knowledge systems, and a mature understanding of contemporary issues.

GQ7 Interdisciplinary effectiveness

Interdisciplinary effectiveness is the integration and synthesis of multiple viewpoints and practices, working effectively across disciplinary boundaries.

GQ8 Integrated professional, ethical, and personal identity

An integrated professional, ethical and personal identity is understanding the interaction between one’s personal and professional selves in an ethical context.

GQ9 Influence

Engaging others in a process, idea or vision.

Outcome map

Learning outcomes Graduate qualities
GQ1 GQ2 GQ3 GQ4 GQ5 GQ6 GQ7 GQ8 GQ9

This section outlines changes made to this unit following staff and student reviews.

No changes have been made since this unit was last offered

Work, health and safety

We are governed by the Work Health and Safety Act 2011, Work Health and Safety Regulation 2011 and Codes of Practice. Penalties for non-compliance have increased. Everyone has a responsibility for health and safety at work. The University’s Work Health and Safety policy explains the responsibilities and expectations of workers and others, and the procedures for managing WHS risks associated with University activities.

General Laboratory Safety Rules

  • No eating or drinking is allowed in any laboratory under any circumstances 
  • A laboratory coat and closed-toe shoes are mandatory 
  • Follow safety instructions in your manual and posted in laboratories 
  • In case of fire, follow instructions posted outside the laboratory door 
  • First aid kits, eye wash and fire extinguishers are located in or immediately outside each laboratory 
  • As a precautionary measure, it is recommended that you have a current tetanus immunisation. This can be obtained from University Health Service: unihealth.usyd.edu.au/

Disclaimer

The University reserves the right to amend units of study or no longer offer certain units, including where there are low enrolment numbers.

To help you understand common terms that we use at the University, we offer an online glossary.